Hb_002048_010

Information

Type -
Description -
Location Contig2048: 8972-10616
Sequence    

Annotation

kegg
ID mdm:103409216
description putative quinone-oxidoreductase homolog, chloroplastic
nr
ID AFK36771.1
description unknown [Lotus japonicus]
swissprot
ID -
description -
trembl
ID I3S929
description Uncharacterized protein OS=Lotus japonicus PE=2 SV=1
Gene Ontology
ID GO:0005773
description quinone-oxidoreductase chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002048_010 0.0 - - unknown [Lotus japonicus]
2 Hb_020332_040 0.0739978555 - - PREDICTED: alcohol dehydrogenase 1-like [Jatropha curcas]
3 Hb_012796_050 0.0818716713 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase 1-deoxyxylulose-5-phosphate synthase, putative [Ricinus communis]
4 Hb_002965_020 0.0855492111 - - hypothetical protein JCGZ_18947 [Jatropha curcas]
5 Hb_004463_040 0.0933427565 - - -
6 Hb_000976_020 0.0954071298 - - leucoanthocyanidin dioxygenase, putative [Ricinus communis]
7 Hb_000189_260 0.1025511183 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000438_190 0.1059071204 - - PREDICTED: peroxidase 4-like [Jatropha curcas]
9 Hb_000245_140 0.1087164002 - - PREDICTED: CASP-like protein 3A1 [Jatropha curcas]
10 Hb_148914_010 0.1088376561 - - glutathione s-transferase, putative [Ricinus communis]
11 Hb_012660_010 0.1097424234 - - hypothetical protein JCGZ_25971 [Jatropha curcas]
12 Hb_002917_010 0.1100625198 - - PREDICTED: receptor-like protein kinase HSL1 [Jatropha curcas]
13 Hb_027141_010 0.111222095 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
14 Hb_011282_070 0.1117041008 - - ATP binding protein, putative [Ricinus communis]
15 Hb_001357_260 0.1140647401 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
16 Hb_021419_060 0.1141071178 - - LRR receptor-like serine/threonine-protein kinase, putative [Theobroma cacao]
17 Hb_002232_370 0.1143489288 - - PREDICTED: receptor-like protein kinase HAIKU2 [Jatropha curcas]
18 Hb_011486_030 0.1149678356 - - branched-chain amino acid aminotransferase, putative [Ricinus communis]
19 Hb_000758_030 0.1236242499 transcription factor TF Family: ERF Ethylene-responsive transcription factor, putative [Ricinus communis]
20 Hb_008225_080 0.1250899181 - - PREDICTED: cytochrome P450 71A26-like [Jatropha curcas]

Gene co-expression network

sample Hb_002048_010 Hb_002048_010 Hb_020332_040 Hb_020332_040 Hb_002048_010--Hb_020332_040 Hb_012796_050 Hb_012796_050 Hb_002048_010--Hb_012796_050 Hb_002965_020 Hb_002965_020 Hb_002048_010--Hb_002965_020 Hb_004463_040 Hb_004463_040 Hb_002048_010--Hb_004463_040 Hb_000976_020 Hb_000976_020 Hb_002048_010--Hb_000976_020 Hb_000189_260 Hb_000189_260 Hb_002048_010--Hb_000189_260 Hb_012660_010 Hb_012660_010 Hb_020332_040--Hb_012660_010 Hb_020332_040--Hb_000189_260 Hb_011486_030 Hb_011486_030 Hb_020332_040--Hb_011486_030 Hb_027141_010 Hb_027141_010 Hb_020332_040--Hb_027141_010 Hb_020332_040--Hb_000976_020 Hb_148914_010 Hb_148914_010 Hb_012796_050--Hb_148914_010 Hb_002232_370 Hb_002232_370 Hb_012796_050--Hb_002232_370 Hb_000438_190 Hb_000438_190 Hb_012796_050--Hb_000438_190 Hb_004712_080 Hb_004712_080 Hb_012796_050--Hb_004712_080 Hb_033363_080 Hb_033363_080 Hb_012796_050--Hb_033363_080 Hb_000245_140 Hb_000245_140 Hb_002965_020--Hb_000245_140 Hb_002965_020--Hb_000976_020 Hb_008080_040 Hb_008080_040 Hb_002965_020--Hb_008080_040 Hb_001357_260 Hb_001357_260 Hb_002965_020--Hb_001357_260 Hb_002917_010 Hb_002917_010 Hb_002965_020--Hb_002917_010 Hb_003900_050 Hb_003900_050 Hb_004463_040--Hb_003900_050 Hb_004200_040 Hb_004200_040 Hb_004463_040--Hb_004200_040 Hb_004463_040--Hb_000976_020 Hb_009012_020 Hb_009012_020 Hb_004463_040--Hb_009012_020 Hb_004463_040--Hb_020332_040 Hb_008225_080 Hb_008225_080 Hb_000976_020--Hb_008225_080 Hb_000758_030 Hb_000758_030 Hb_000976_020--Hb_000758_030 Hb_000976_020--Hb_001357_260 Hb_000976_020--Hb_000189_260 Hb_000189_260--Hb_002917_010 Hb_000189_260--Hb_012660_010 Hb_000189_260--Hb_001357_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.88023 0.834199 0.870015 0 0.0202722
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0870425 0 0 15.596 0.917893

CAGE analysis