Hb_027141_010

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig27141: 28-699
Sequence    

Annotation

kegg
ID rcu:RCOM_1292200
description Disease resistance protein RGA2, putative (EC:3.1.3.16)
nr
ID XP_012066789.1
description PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
swissprot
ID Q7XA40
description Putative disease resistance protein RGA3 OS=Solanum bulbocastanum GN=RGA3 PE=2 SV=2
trembl
ID A0A067LDA6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00277 PE=4 SV=1
Gene Ontology
ID GO:0043531
description disease resistance protein rga1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_027141_010 0.0 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
2 Hb_000140_260 0.0597666024 - - PREDICTED: uncharacterized protein LOC105642920 [Jatropha curcas]
3 Hb_076895_020 0.0666967003 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 isoform X2 [Jatropha curcas]
4 Hb_020332_040 0.0772044357 - - PREDICTED: alcohol dehydrogenase 1-like [Jatropha curcas]
5 Hb_004200_040 0.0805433986 - - laccase, putative [Ricinus communis]
6 Hb_000539_080 0.0815241519 - - hypothetical protein POPTR_0039s00260g, partial [Populus trichocarpa]
7 Hb_000205_210 0.0835859294 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein At4g27190-like isoform X1 [Citrus sinensis]
8 Hb_011486_030 0.0868844227 - - branched-chain amino acid aminotransferase, putative [Ricinus communis]
9 Hb_000497_120 0.0875861879 - - conserved hypothetical protein [Ricinus communis]
10 Hb_012660_010 0.0884458383 - - hypothetical protein JCGZ_25971 [Jatropha curcas]
11 Hb_000438_190 0.0967005278 - - PREDICTED: peroxidase 4-like [Jatropha curcas]
12 Hb_000984_080 0.0988843206 - - PREDICTED: receptor-like protein kinase HAIKU2 [Jatropha curcas]
13 Hb_004463_040 0.0993507126 - - -
14 Hb_002110_270 0.1092210832 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH96 [Jatropha curcas]
15 Hb_003900_050 0.1094451237 transcription factor TF Family: HSF Heat Stress Transcription Factor family protein [Populus trichocarpa]
16 Hb_005064_040 0.1101225949 - - hypothetical protein POPTR_0008s02680g [Populus trichocarpa]
17 Hb_002048_010 0.111222095 - - unknown [Lotus japonicus]
18 Hb_000081_020 0.1115576955 - - PREDICTED: protein NRT1/ PTR FAMILY 1.1-like [Camelina sativa]
19 Hb_000301_030 0.1125577823 - - PREDICTED: pectate lyase-like [Jatropha curcas]
20 Hb_000648_120 0.1147585947 - - PREDICTED: L-type lectin-domain containing receptor kinase IV.1 [Vitis vinifera]

Gene co-expression network

sample Hb_027141_010 Hb_027141_010 Hb_000140_260 Hb_000140_260 Hb_027141_010--Hb_000140_260 Hb_076895_020 Hb_076895_020 Hb_027141_010--Hb_076895_020 Hb_020332_040 Hb_020332_040 Hb_027141_010--Hb_020332_040 Hb_004200_040 Hb_004200_040 Hb_027141_010--Hb_004200_040 Hb_000539_080 Hb_000539_080 Hb_027141_010--Hb_000539_080 Hb_000205_210 Hb_000205_210 Hb_027141_010--Hb_000205_210 Hb_000140_260--Hb_004200_040 Hb_000140_260--Hb_000205_210 Hb_000140_260--Hb_076895_020 Hb_000140_260--Hb_000539_080 Hb_000984_080 Hb_000984_080 Hb_000140_260--Hb_000984_080 Hb_076895_020--Hb_000539_080 Hb_002110_270 Hb_002110_270 Hb_076895_020--Hb_002110_270 Hb_006006_070 Hb_006006_070 Hb_076895_020--Hb_006006_070 Hb_076895_020--Hb_000984_080 Hb_000758_030 Hb_000758_030 Hb_076895_020--Hb_000758_030 Hb_012660_010 Hb_012660_010 Hb_020332_040--Hb_012660_010 Hb_000189_260 Hb_000189_260 Hb_020332_040--Hb_000189_260 Hb_002048_010 Hb_002048_010 Hb_020332_040--Hb_002048_010 Hb_011486_030 Hb_011486_030 Hb_020332_040--Hb_011486_030 Hb_000976_020 Hb_000976_020 Hb_020332_040--Hb_000976_020 Hb_004200_040--Hb_000205_210 Hb_003900_050 Hb_003900_050 Hb_004200_040--Hb_003900_050 Hb_004463_040 Hb_004463_040 Hb_004200_040--Hb_004463_040 Hb_000684_020 Hb_000684_020 Hb_004200_040--Hb_000684_020 Hb_000081_020 Hb_000081_020 Hb_000539_080--Hb_000081_020 Hb_000948_070 Hb_000948_070 Hb_000539_080--Hb_000948_070 Hb_000539_080--Hb_002110_270 Hb_000539_080--Hb_006006_070 Hb_000205_210--Hb_003900_050 Hb_001105_200 Hb_001105_200 Hb_000205_210--Hb_001105_200 Hb_000205_210--Hb_000984_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.371543 0.0604827 0.30696 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 2.63822 0.141684

CAGE analysis