Hb_002110_270

Information

Type transcription factor
Description TF Family: bHLH
Location Contig2110: 234399-235801
Sequence    

Annotation

kegg
ID rcu:RCOM_1037580
description DNA binding protein, putative
nr
ID XP_012067935.1
description PREDICTED: transcription factor bHLH96 [Jatropha curcas]
swissprot
ID Q9C7T4
description Transcription factor bHLH96 OS=Arabidopsis thaliana GN=BHLH96 PE=2 SV=1
trembl
ID A0A067KZ33
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15839 PE=4 SV=1
Gene Ontology
ID GO:0046983
description transcription factor bhlh96

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002110_270 0.0 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH96 [Jatropha curcas]
2 Hb_006006_070 0.0594732295 - - UDP-glucosyltransferase, putative [Ricinus communis]
3 Hb_000758_030 0.0611598576 transcription factor TF Family: ERF Ethylene-responsive transcription factor, putative [Ricinus communis]
4 Hb_076895_020 0.0629179582 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 isoform X2 [Jatropha curcas]
5 Hb_000539_080 0.0712817344 - - hypothetical protein POPTR_0039s00260g, partial [Populus trichocarpa]
6 Hb_000984_080 0.0915729497 - - PREDICTED: receptor-like protein kinase HAIKU2 [Jatropha curcas]
7 Hb_002900_070 0.0980716797 - - conserved hypothetical protein [Ricinus communis]
8 Hb_008225_080 0.1004267001 - - PREDICTED: cytochrome P450 71A26-like [Jatropha curcas]
9 Hb_000441_170 0.100846429 - - PREDICTED: uncharacterized protein LOC105636851 [Jatropha curcas]
10 Hb_000948_070 0.1013280587 - - hypothetical protein POPTR_0016s01720g [Populus trichocarpa]
11 Hb_000567_310 0.1065235399 - - Miraculin precursor, putative [Ricinus communis]
12 Hb_001405_100 0.1070578135 - - PREDICTED: lysM domain receptor-like kinase 4 [Jatropha curcas]
13 Hb_000238_060 0.1071589089 - - hypothetical protein JCGZ_24970 [Jatropha curcas]
14 Hb_032050_050 0.107349932 - - PREDICTED: peroxidase 12-like [Jatropha curcas]
15 Hb_000976_020 0.1086209751 - - leucoanthocyanidin dioxygenase, putative [Ricinus communis]
16 Hb_002232_400 0.1088307356 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH25-like [Jatropha curcas]
17 Hb_027141_010 0.1092210832 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
18 Hb_000081_020 0.1092654649 - - PREDICTED: protein NRT1/ PTR FAMILY 1.1-like [Camelina sativa]
19 Hb_000237_150 0.111771035 - - Epoxide hydrolase 2 [Morus notabilis]
20 Hb_000140_260 0.1149039314 - - PREDICTED: uncharacterized protein LOC105642920 [Jatropha curcas]

Gene co-expression network

sample Hb_002110_270 Hb_002110_270 Hb_006006_070 Hb_006006_070 Hb_002110_270--Hb_006006_070 Hb_000758_030 Hb_000758_030 Hb_002110_270--Hb_000758_030 Hb_076895_020 Hb_076895_020 Hb_002110_270--Hb_076895_020 Hb_000539_080 Hb_000539_080 Hb_002110_270--Hb_000539_080 Hb_000984_080 Hb_000984_080 Hb_002110_270--Hb_000984_080 Hb_002900_070 Hb_002900_070 Hb_002110_270--Hb_002900_070 Hb_006006_070--Hb_076895_020 Hb_006006_070--Hb_000758_030 Hb_002232_400 Hb_002232_400 Hb_006006_070--Hb_002232_400 Hb_006006_070--Hb_000539_080 Hb_000441_170 Hb_000441_170 Hb_006006_070--Hb_000441_170 Hb_008225_080 Hb_008225_080 Hb_000758_030--Hb_008225_080 Hb_000758_030--Hb_076895_020 Hb_000976_020 Hb_000976_020 Hb_000758_030--Hb_000976_020 Hb_000758_030--Hb_000539_080 Hb_076895_020--Hb_000539_080 Hb_027141_010 Hb_027141_010 Hb_076895_020--Hb_027141_010 Hb_076895_020--Hb_000984_080 Hb_000081_020 Hb_000081_020 Hb_000539_080--Hb_000081_020 Hb_000948_070 Hb_000948_070 Hb_000539_080--Hb_000948_070 Hb_000539_080--Hb_027141_010 Hb_000140_260 Hb_000140_260 Hb_000984_080--Hb_000140_260 Hb_000984_080--Hb_000539_080 Hb_000984_080--Hb_000758_030 Hb_000984_080--Hb_006006_070 Hb_002900_070--Hb_000441_170 Hb_002900_070--Hb_000948_070 Hb_002900_070--Hb_006006_070 Hb_002900_070--Hb_002232_400 Hb_002900_070--Hb_076895_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.679101 0.155706 0.39501 0 0.0221641
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 3.12063 0.0756794

CAGE analysis