Hb_002900_070

Information

Type -
Description -
Location Contig2900: 117904-119862
Sequence    

Annotation

kegg
ID rcu:RCOM_0497920
description hypothetical protein
nr
ID XP_002530400.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SWN1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0497920 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002900_070 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000441_170 0.067238981 - - PREDICTED: uncharacterized protein LOC105636851 [Jatropha curcas]
3 Hb_000948_070 0.0887629361 - - hypothetical protein POPTR_0016s01720g [Populus trichocarpa]
4 Hb_006006_070 0.0927587777 - - UDP-glucosyltransferase, putative [Ricinus communis]
5 Hb_002232_400 0.0961057126 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH25-like [Jatropha curcas]
6 Hb_002110_270 0.0980716797 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH96 [Jatropha curcas]
7 Hb_076895_020 0.1031249012 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 isoform X2 [Jatropha curcas]
8 Hb_000539_080 0.1051648986 - - hypothetical protein POPTR_0039s00260g, partial [Populus trichocarpa]
9 Hb_000175_480 0.1057821024 - - hypothetical protein JCGZ_06165 [Jatropha curcas]
10 Hb_000758_030 0.1066754384 transcription factor TF Family: ERF Ethylene-responsive transcription factor, putative [Ricinus communis]
11 Hb_000984_080 0.1086591411 - - PREDICTED: receptor-like protein kinase HAIKU2 [Jatropha curcas]
12 Hb_001405_100 0.1089940033 - - PREDICTED: lysM domain receptor-like kinase 4 [Jatropha curcas]
13 Hb_000567_310 0.1136667492 - - Miraculin precursor, putative [Ricinus communis]
14 Hb_098795_010 0.1152459544 - - PREDICTED: naringenin,2-oxoglutarate 3-dioxygenase-like [Jatropha curcas]
15 Hb_032050_050 0.1160541168 - - PREDICTED: peroxidase 12-like [Jatropha curcas]
16 Hb_002272_160 0.1187945842 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
17 Hb_008225_080 0.1254283891 - - PREDICTED: cytochrome P450 71A26-like [Jatropha curcas]
18 Hb_006538_050 0.1259566305 - - hypothetical protein RCOM_1308310 [Ricinus communis]
19 Hb_000003_470 0.1261703745 - - conserved hypothetical protein [Ricinus communis]
20 Hb_002232_370 0.1266390795 - - PREDICTED: receptor-like protein kinase HAIKU2 [Jatropha curcas]

Gene co-expression network

sample Hb_002900_070 Hb_002900_070 Hb_000441_170 Hb_000441_170 Hb_002900_070--Hb_000441_170 Hb_000948_070 Hb_000948_070 Hb_002900_070--Hb_000948_070 Hb_006006_070 Hb_006006_070 Hb_002900_070--Hb_006006_070 Hb_002232_400 Hb_002232_400 Hb_002900_070--Hb_002232_400 Hb_002110_270 Hb_002110_270 Hb_002900_070--Hb_002110_270 Hb_076895_020 Hb_076895_020 Hb_002900_070--Hb_076895_020 Hb_000441_170--Hb_002232_400 Hb_000441_170--Hb_006006_070 Hb_002272_160 Hb_002272_160 Hb_000441_170--Hb_002272_160 Hb_098795_010 Hb_098795_010 Hb_000441_170--Hb_098795_010 Hb_000441_170--Hb_076895_020 Hb_000539_080 Hb_000539_080 Hb_000948_070--Hb_000539_080 Hb_000567_310 Hb_000567_310 Hb_000948_070--Hb_000567_310 Hb_164162_020 Hb_164162_020 Hb_000948_070--Hb_164162_020 Hb_006538_050 Hb_006538_050 Hb_000948_070--Hb_006538_050 Hb_000948_070--Hb_076895_020 Hb_006006_070--Hb_002110_270 Hb_006006_070--Hb_076895_020 Hb_000758_030 Hb_000758_030 Hb_006006_070--Hb_000758_030 Hb_006006_070--Hb_002232_400 Hb_006006_070--Hb_000539_080 Hb_002232_400--Hb_076895_020 Hb_002232_370 Hb_002232_370 Hb_002232_400--Hb_002232_370 Hb_000438_190 Hb_000438_190 Hb_002232_400--Hb_000438_190 Hb_002110_270--Hb_000758_030 Hb_002110_270--Hb_076895_020 Hb_002110_270--Hb_000539_080 Hb_000984_080 Hb_000984_080 Hb_002110_270--Hb_000984_080 Hb_076895_020--Hb_000539_080 Hb_027141_010 Hb_027141_010 Hb_076895_020--Hb_027141_010 Hb_076895_020--Hb_000984_080 Hb_076895_020--Hb_000758_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.261291 4.44501 1.07099 3.35071 0.0464151 0.0615799
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0368252 0 0.108208 22.7241 0.240849

CAGE analysis