Hb_002965_020

Information

Type -
Description -
Location Contig2965: 16992-19607
Sequence    

Annotation

kegg
ID tcc:TCM_021288
description Pathogenesis-related protein 10.5
nr
ID KDP27867.1
description hypothetical protein JCGZ_18947 [Jatropha curcas]
swissprot
ID P17641
description Pathogenesis-related protein STH-21 OS=Solanum tuberosum GN=STH-21 PE=2 SV=1
trembl
ID F6H6U6
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0077g01570 PE=4 SV=1
Gene Ontology
ID GO:0006952
description pathogenesis-related protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31010: 18820-19552
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002965_020 0.0 - - hypothetical protein JCGZ_18947 [Jatropha curcas]
2 Hb_000245_140 0.0821565628 - - PREDICTED: CASP-like protein 3A1 [Jatropha curcas]
3 Hb_002048_010 0.0855492111 - - unknown [Lotus japonicus]
4 Hb_000976_020 0.0861283983 - - leucoanthocyanidin dioxygenase, putative [Ricinus communis]
5 Hb_008080_040 0.0885134183 - - hypothetical protein EUGRSUZ_D00834 [Eucalyptus grandis]
6 Hb_001357_260 0.0897627413 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
7 Hb_002917_010 0.0904201423 - - PREDICTED: receptor-like protein kinase HSL1 [Jatropha curcas]
8 Hb_002232_370 0.0904431902 - - PREDICTED: receptor-like protein kinase HAIKU2 [Jatropha curcas]
9 Hb_000327_300 0.0931728419 - - PREDICTED: ABC transporter G family member 6-like [Jatropha curcas]
10 Hb_001544_040 0.0940079491 - - PREDICTED: uncharacterized protein At1g66480-like [Populus euphratica]
11 Hb_148914_010 0.0954670584 - - glutathione s-transferase, putative [Ricinus communis]
12 Hb_020332_040 0.0989961132 - - PREDICTED: alcohol dehydrogenase 1-like [Jatropha curcas]
13 Hb_008705_070 0.0992880631 - - PREDICTED: uncharacterized protein LOC105638774 [Jatropha curcas]
14 Hb_000758_030 0.1028290395 transcription factor TF Family: ERF Ethylene-responsive transcription factor, putative [Ricinus communis]
15 Hb_001328_110 0.1030898751 - - PREDICTED: LON peptidase N-terminal domain and RING finger protein 1-like [Jatropha curcas]
16 Hb_010407_120 0.1033082824 - - PREDICTED: glutathione transferase GST 23-like [Jatropha curcas]
17 Hb_012660_010 0.1051964312 - - hypothetical protein JCGZ_25971 [Jatropha curcas]
18 Hb_004586_080 0.1080998511 - - hypothetical protein POPTR_0002s10520g [Populus trichocarpa]
19 Hb_003855_070 0.1082635052 - - hypothetical protein POPTR_0001s30980g [Populus trichocarpa]
20 Hb_076895_020 0.1092021548 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_002965_020 Hb_002965_020 Hb_000245_140 Hb_000245_140 Hb_002965_020--Hb_000245_140 Hb_002048_010 Hb_002048_010 Hb_002965_020--Hb_002048_010 Hb_000976_020 Hb_000976_020 Hb_002965_020--Hb_000976_020 Hb_008080_040 Hb_008080_040 Hb_002965_020--Hb_008080_040 Hb_001357_260 Hb_001357_260 Hb_002965_020--Hb_001357_260 Hb_002917_010 Hb_002917_010 Hb_002965_020--Hb_002917_010 Hb_002232_370 Hb_002232_370 Hb_000245_140--Hb_002232_370 Hb_148914_010 Hb_148914_010 Hb_000245_140--Hb_148914_010 Hb_000245_140--Hb_000976_020 Hb_000648_120 Hb_000648_120 Hb_000245_140--Hb_000648_120 Hb_000563_610 Hb_000563_610 Hb_000245_140--Hb_000563_610 Hb_020332_040 Hb_020332_040 Hb_002048_010--Hb_020332_040 Hb_012796_050 Hb_012796_050 Hb_002048_010--Hb_012796_050 Hb_004463_040 Hb_004463_040 Hb_002048_010--Hb_004463_040 Hb_002048_010--Hb_000976_020 Hb_000189_260 Hb_000189_260 Hb_002048_010--Hb_000189_260 Hb_008225_080 Hb_008225_080 Hb_000976_020--Hb_008225_080 Hb_000758_030 Hb_000758_030 Hb_000976_020--Hb_000758_030 Hb_000976_020--Hb_001357_260 Hb_000976_020--Hb_000189_260 Hb_000976_020--Hb_020332_040 Hb_000327_300 Hb_000327_300 Hb_008080_040--Hb_000327_300 Hb_004586_080 Hb_004586_080 Hb_008080_040--Hb_004586_080 Hb_000407_110 Hb_000407_110 Hb_008080_040--Hb_000407_110 Hb_020902_020 Hb_020902_020 Hb_008080_040--Hb_020902_020 Hb_008080_040--Hb_001357_260 Hb_112082_030 Hb_112082_030 Hb_001357_260--Hb_112082_030 Hb_001357_260--Hb_002917_010 Hb_001357_260--Hb_004586_080 Hb_001357_260--Hb_000327_300 Hb_002917_010--Hb_000189_260 Hb_002917_010--Hb_000976_020 Hb_146023_010 Hb_146023_010 Hb_002917_010--Hb_146023_010 Hb_064398_010 Hb_064398_010 Hb_002917_010--Hb_064398_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.387534 0.179885 0.176019 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 3.1507 0.0713315

CAGE analysis