Hb_000327_300

Information

Type -
Description -
Location Contig327: 333494-336034
Sequence    

Annotation

kegg
ID rcu:RCOM_0745750
description ATP-binding cassette transporter, putative (EC:3.6.3.28)
nr
ID XP_012073054.1
description PREDICTED: ABC transporter G family member 6-like [Jatropha curcas]
swissprot
ID O80946
description ABC transporter G family member 1 OS=Arabidopsis thaliana GN=ABCG1 PE=2 SV=1
trembl
ID A0A067LCF8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06603 PE=3 SV=1
Gene Ontology
ID GO:0016020
description abc transporter g family member 6-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000327_300 0.0 - - PREDICTED: ABC transporter G family member 6-like [Jatropha curcas]
2 Hb_004586_080 0.0518109647 - - hypothetical protein POPTR_0002s10520g [Populus trichocarpa]
3 Hb_008080_040 0.0584161599 - - hypothetical protein EUGRSUZ_D00834 [Eucalyptus grandis]
4 Hb_002965_020 0.0931728419 - - hypothetical protein JCGZ_18947 [Jatropha curcas]
5 Hb_000407_110 0.0954354554 - - ripening-induced ACC oxidase [Carica papaya]
6 Hb_001357_260 0.0959778726 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
7 Hb_001168_010 0.104699688 - - PREDICTED: feruloyl CoA ortho-hydroxylase 1 [Jatropha curcas]
8 Hb_008705_070 0.1078696734 - - PREDICTED: uncharacterized protein LOC105638774 [Jatropha curcas]
9 Hb_007483_030 0.1079623924 - - -
10 Hb_000038_090 0.1109620117 transcription factor TF Family: NAC hypothetical protein POPTR_0002s05820g [Populus trichocarpa]
11 Hb_039342_030 0.1129122115 - - conserved hypothetical protein [Ricinus communis]
12 Hb_002917_010 0.1138985652 - - PREDICTED: receptor-like protein kinase HSL1 [Jatropha curcas]
13 Hb_010839_070 0.1165656508 - - uncharacterized protein LOC100810725 [Glycine max]
14 Hb_027288_010 0.1237347947 - - mutt domain protein, putative [Ricinus communis]
15 Hb_016172_010 0.1253961975 - - hypothetical protein JCGZ_23602 [Jatropha curcas]
16 Hb_001571_010 0.1260863488 - - hypothetical protein JCGZ_15779 [Jatropha curcas]
17 Hb_007747_030 0.1290962534 - - PREDICTED: WD repeat-containing protein LWD2-like [Jatropha curcas]
18 Hb_003052_070 0.1298515955 - - PREDICTED: peroxidase 11 [Jatropha curcas]
19 Hb_000976_020 0.1300644155 - - leucoanthocyanidin dioxygenase, putative [Ricinus communis]
20 Hb_000245_140 0.1304935999 - - PREDICTED: CASP-like protein 3A1 [Jatropha curcas]

Gene co-expression network

sample Hb_000327_300 Hb_000327_300 Hb_004586_080 Hb_004586_080 Hb_000327_300--Hb_004586_080 Hb_008080_040 Hb_008080_040 Hb_000327_300--Hb_008080_040 Hb_002965_020 Hb_002965_020 Hb_000327_300--Hb_002965_020 Hb_000407_110 Hb_000407_110 Hb_000327_300--Hb_000407_110 Hb_001357_260 Hb_001357_260 Hb_000327_300--Hb_001357_260 Hb_001168_010 Hb_001168_010 Hb_000327_300--Hb_001168_010 Hb_004586_080--Hb_008080_040 Hb_004586_080--Hb_001357_260 Hb_004586_080--Hb_000407_110 Hb_007483_030 Hb_007483_030 Hb_004586_080--Hb_007483_030 Hb_008705_070 Hb_008705_070 Hb_004586_080--Hb_008705_070 Hb_008080_040--Hb_000407_110 Hb_008080_040--Hb_002965_020 Hb_020902_020 Hb_020902_020 Hb_008080_040--Hb_020902_020 Hb_008080_040--Hb_001357_260 Hb_000245_140 Hb_000245_140 Hb_002965_020--Hb_000245_140 Hb_002048_010 Hb_002048_010 Hb_002965_020--Hb_002048_010 Hb_000976_020 Hb_000976_020 Hb_002965_020--Hb_000976_020 Hb_002965_020--Hb_001357_260 Hb_002917_010 Hb_002917_010 Hb_002965_020--Hb_002917_010 Hb_006919_010 Hb_006919_010 Hb_000407_110--Hb_006919_010 Hb_001609_080 Hb_001609_080 Hb_000407_110--Hb_001609_080 Hb_000407_110--Hb_007483_030 Hb_005653_100 Hb_005653_100 Hb_000407_110--Hb_005653_100 Hb_112082_030 Hb_112082_030 Hb_001357_260--Hb_112082_030 Hb_001357_260--Hb_002917_010 Hb_001357_260--Hb_000976_020 Hb_001168_010--Hb_000245_140 Hb_000631_130 Hb_000631_130 Hb_001168_010--Hb_000631_130 Hb_001168_010--Hb_004586_080 Hb_001168_010--Hb_008080_040 Hb_000038_090 Hb_000038_090 Hb_001168_010--Hb_000038_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.496065 0.325563 0.0791606 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 3.49712 0.0321934

CAGE analysis