Hb_000038_090

Information

Type transcription factor
Description TF Family: NAC
Location Contig38: 65942-67220
Sequence    

Annotation

kegg
ID pop:POPTR_0002s05820g
description POPTRDRAFT_754356; hypothetical protein
nr
ID XP_002300866.2
description hypothetical protein POPTR_0002s05820g [Populus trichocarpa]
swissprot
ID Q9SK55
description Transcription factor JUNGBRUNNEN 1 OS=Arabidopsis thaliana GN=JUB1 PE=1 SV=1
trembl
ID B9GT11
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s05820g PE=4 SV=2
Gene Ontology
ID GO:0003677
description transcription factor jungbrunnen 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000038_090 0.0 transcription factor TF Family: NAC hypothetical protein POPTR_0002s05820g [Populus trichocarpa]
2 Hb_000631_130 0.0660923963 - - PREDICTED: flavonoid 3'-monooxygenase [Jatropha curcas]
3 Hb_001473_100 0.1075379661 - - chalcone synthase 1 [Jatropha curcas]
4 Hb_000933_200 0.1097854494 - - Cationic peroxidase 2 precursor, putative [Ricinus communis]
5 Hb_000327_300 0.1109620117 - - PREDICTED: ABC transporter G family member 6-like [Jatropha curcas]
6 Hb_007747_030 0.112469419 - - PREDICTED: WD repeat-containing protein LWD2-like [Jatropha curcas]
7 Hb_000407_110 0.1129020094 - - ripening-induced ACC oxidase [Carica papaya]
8 Hb_007483_030 0.1137521483 - - -
9 Hb_001168_010 0.1185229284 - - PREDICTED: feruloyl CoA ortho-hydroxylase 1 [Jatropha curcas]
10 Hb_003253_020 0.1226733492 transcription factor TF Family: B3 transcription factor, putative [Ricinus communis]
11 Hb_025469_040 0.1256104468 - - PREDICTED: acidic mammalian chitinase-like [Jatropha curcas]
12 Hb_156144_040 0.1272329084 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
13 Hb_004586_080 0.1278693457 - - hypothetical protein POPTR_0002s10520g [Populus trichocarpa]
14 Hb_000069_050 0.1299667022 transcription factor TF Family: MYB PREDICTED: myb-related protein 308-like [Populus euphratica]
15 Hb_007044_070 0.130327103 - - PREDICTED: tetraketide alpha-pyrone reductase 1-like [Jatropha curcas]
16 Hb_005653_100 0.1306215505 - - hypothetical protein POPTR_0004s19580g [Populus trichocarpa]
17 Hb_008080_040 0.1380650863 - - hypothetical protein EUGRSUZ_D00834 [Eucalyptus grandis]
18 Hb_027288_010 0.1388690697 - - mutt domain protein, putative [Ricinus communis]
19 Hb_008705_070 0.1405411329 - - PREDICTED: uncharacterized protein LOC105638774 [Jatropha curcas]
20 Hb_003052_070 0.1419402809 - - PREDICTED: peroxidase 11 [Jatropha curcas]

Gene co-expression network

sample Hb_000038_090 Hb_000038_090 Hb_000631_130 Hb_000631_130 Hb_000038_090--Hb_000631_130 Hb_001473_100 Hb_001473_100 Hb_000038_090--Hb_001473_100 Hb_000933_200 Hb_000933_200 Hb_000038_090--Hb_000933_200 Hb_000327_300 Hb_000327_300 Hb_000038_090--Hb_000327_300 Hb_007747_030 Hb_007747_030 Hb_000038_090--Hb_007747_030 Hb_000407_110 Hb_000407_110 Hb_000038_090--Hb_000407_110 Hb_000631_130--Hb_001473_100 Hb_025469_040 Hb_025469_040 Hb_000631_130--Hb_025469_040 Hb_007044_070 Hb_007044_070 Hb_000631_130--Hb_007044_070 Hb_000631_130--Hb_000933_200 Hb_131864_020 Hb_131864_020 Hb_000631_130--Hb_131864_020 Hb_001473_100--Hb_025469_040 Hb_001473_100--Hb_131864_020 Hb_004055_080 Hb_004055_080 Hb_001473_100--Hb_004055_080 Hb_001473_100--Hb_007044_070 Hb_003253_020 Hb_003253_020 Hb_000933_200--Hb_003253_020 Hb_000617_340 Hb_000617_340 Hb_000933_200--Hb_000617_340 Hb_010407_120 Hb_010407_120 Hb_000933_200--Hb_010407_120 Hb_000513_110 Hb_000513_110 Hb_000933_200--Hb_000513_110 Hb_001544_040 Hb_001544_040 Hb_000933_200--Hb_001544_040 Hb_003786_060 Hb_003786_060 Hb_000933_200--Hb_003786_060 Hb_004586_080 Hb_004586_080 Hb_000327_300--Hb_004586_080 Hb_008080_040 Hb_008080_040 Hb_000327_300--Hb_008080_040 Hb_002965_020 Hb_002965_020 Hb_000327_300--Hb_002965_020 Hb_000327_300--Hb_000407_110 Hb_001357_260 Hb_001357_260 Hb_000327_300--Hb_001357_260 Hb_001168_010 Hb_001168_010 Hb_000327_300--Hb_001168_010 Hb_007483_030 Hb_007483_030 Hb_007747_030--Hb_007483_030 Hb_027288_010 Hb_027288_010 Hb_007747_030--Hb_027288_010 Hb_003052_070 Hb_003052_070 Hb_007747_030--Hb_003052_070 Hb_007747_030--Hb_003786_060 Hb_003166_040 Hb_003166_040 Hb_007747_030--Hb_003166_040 Hb_058526_010 Hb_058526_010 Hb_007747_030--Hb_058526_010 Hb_006919_010 Hb_006919_010 Hb_000407_110--Hb_006919_010 Hb_001609_080 Hb_001609_080 Hb_000407_110--Hb_001609_080 Hb_000407_110--Hb_007483_030 Hb_000407_110--Hb_008080_040 Hb_005653_100 Hb_005653_100 Hb_000407_110--Hb_005653_100 Hb_000407_110--Hb_004586_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.178444 0.287918 0.08404 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.89448 0

CAGE analysis