Hb_000407_110

Information

Type -
Description -
Location Contig407: 292509-294072
Sequence    

Annotation

kegg
ID mdm:103404960
description 1-aminocyclopropane-1-carboxylate oxidase
nr
ID AAL78058.1
description ripening-induced ACC oxidase [Carica papaya]
swissprot
ID P31528
description Probable 1-aminocyclopropane-1-carboxylate oxidase OS=Dianthus caryophyllus GN=ACO PE=2 SV=1
trembl
ID Q8S9H5
description Ripening-induced ACC oxidase OS=Carica papaya PE=2 SV=1
Gene Ontology
ID GO:0016706
description 1-aminocyclopropane-1-carboxylate oxidase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40326: 292564-293972
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000407_110 0.0 - - ripening-induced ACC oxidase [Carica papaya]
2 Hb_006919_010 0.0737275989 - - PREDICTED: putative wall-associated receptor kinase-like 16 [Vitis vinifera]
3 Hb_001609_080 0.0754986433 - - hypothetical protein POPTR_0017s05660g [Populus trichocarpa]
4 Hb_007483_030 0.0758735851 - - -
5 Hb_008080_040 0.0832119636 - - hypothetical protein EUGRSUZ_D00834 [Eucalyptus grandis]
6 Hb_005653_100 0.0901634421 - - hypothetical protein POPTR_0004s19580g [Populus trichocarpa]
7 Hb_004586_080 0.0918785104 - - hypothetical protein POPTR_0002s10520g [Populus trichocarpa]
8 Hb_000327_300 0.0954354554 - - PREDICTED: ABC transporter G family member 6-like [Jatropha curcas]
9 Hb_027288_010 0.0997020283 - - mutt domain protein, putative [Ricinus communis]
10 Hb_007747_030 0.1022726716 - - PREDICTED: WD repeat-containing protein LWD2-like [Jatropha curcas]
11 Hb_020902_020 0.1114217873 - - hypothetical protein JCGZ_07820 [Jatropha curcas]
12 Hb_003166_040 0.1121757381 - - PREDICTED: probable indole-3-acetic acid-amido synthetase GH3.1 [Jatropha curcas]
13 Hb_002374_110 0.1125113534 - - PREDICTED: uncharacterized protein LOC105638965 [Jatropha curcas]
14 Hb_000038_090 0.1129020094 transcription factor TF Family: NAC hypothetical protein POPTR_0002s05820g [Populus trichocarpa]
15 Hb_003581_240 0.1156416043 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
16 Hb_058526_010 0.1170454975 - - -
17 Hb_002376_030 0.1266630993 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
18 Hb_000631_130 0.1266704265 - - PREDICTED: flavonoid 3'-monooxygenase [Jatropha curcas]
19 Hb_127743_030 0.1276307806 - - amino acid transporter, putative [Ricinus communis]
20 Hb_001168_010 0.1283494482 - - PREDICTED: feruloyl CoA ortho-hydroxylase 1 [Jatropha curcas]

Gene co-expression network

sample Hb_000407_110 Hb_000407_110 Hb_006919_010 Hb_006919_010 Hb_000407_110--Hb_006919_010 Hb_001609_080 Hb_001609_080 Hb_000407_110--Hb_001609_080 Hb_007483_030 Hb_007483_030 Hb_000407_110--Hb_007483_030 Hb_008080_040 Hb_008080_040 Hb_000407_110--Hb_008080_040 Hb_005653_100 Hb_005653_100 Hb_000407_110--Hb_005653_100 Hb_004586_080 Hb_004586_080 Hb_000407_110--Hb_004586_080 Hb_006919_010--Hb_001609_080 Hb_002374_110 Hb_002374_110 Hb_006919_010--Hb_002374_110 Hb_002376_030 Hb_002376_030 Hb_006919_010--Hb_002376_030 Hb_006919_010--Hb_007483_030 Hb_003166_040 Hb_003166_040 Hb_006919_010--Hb_003166_040 Hb_001609_080--Hb_005653_100 Hb_020902_020 Hb_020902_020 Hb_001609_080--Hb_020902_020 Hb_000288_140 Hb_000288_140 Hb_001609_080--Hb_000288_140 Hb_111693_010 Hb_111693_010 Hb_001609_080--Hb_111693_010 Hb_027288_010 Hb_027288_010 Hb_007483_030--Hb_027288_010 Hb_007747_030 Hb_007747_030 Hb_007483_030--Hb_007747_030 Hb_003052_070 Hb_003052_070 Hb_007483_030--Hb_003052_070 Hb_007483_030--Hb_003166_040 Hb_002272_160 Hb_002272_160 Hb_007483_030--Hb_002272_160 Hb_000327_300 Hb_000327_300 Hb_008080_040--Hb_000327_300 Hb_008080_040--Hb_004586_080 Hb_002965_020 Hb_002965_020 Hb_008080_040--Hb_002965_020 Hb_008080_040--Hb_020902_020 Hb_001357_260 Hb_001357_260 Hb_008080_040--Hb_001357_260 Hb_005653_100--Hb_020902_020 Hb_005653_100--Hb_111693_010 Hb_004055_080 Hb_004055_080 Hb_005653_100--Hb_004055_080 Hb_005653_100--Hb_006919_010 Hb_004586_080--Hb_000327_300 Hb_004586_080--Hb_001357_260 Hb_004586_080--Hb_007483_030 Hb_008705_070 Hb_008705_070 Hb_004586_080--Hb_008705_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 43.1002 34.5232 9.99994 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.075847 0 0.222608 209.961 1.42436

CAGE analysis