Hb_000288_140

Information

Type -
Description -
Location Contig288: 311178-339378
Sequence    

Annotation

kegg
ID egr:104447479
description uncharacterized LOC104447479
nr
ID XP_012086244.1
description PREDICTED: putative cysteine-rich receptor-like protein kinase 35 [Jatropha curcas]
swissprot
ID Q9M0X5
description Cysteine-rich receptor-like protein kinase 25 OS=Arabidopsis thaliana GN=CRK25 PE=3 SV=1
trembl
ID A0A067JAH5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21282 PE=4 SV=1
Gene Ontology
ID GO:0000166
description cysteine-rich receptor-like protein kinase 25

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30077: 319160-319883 , PASA_asmbl_30078: 320114-320704 , PASA_asmbl_30079: 326792-327394 , PASA_asmbl_30080: 333453-333974 , PASA_asmbl_30081: 334110-335358 , PASA_asmbl_30082: 338520-338801
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000288_140 0.0 - - PREDICTED: putative cysteine-rich receptor-like protein kinase 35 [Jatropha curcas]
2 Hb_001660_040 0.0595307816 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Jatropha curcas]
3 Hb_001609_080 0.0998166928 - - hypothetical protein POPTR_0017s05660g [Populus trichocarpa]
4 Hb_058526_010 0.1058803761 - - -
5 Hb_000005_350 0.1141752559 - - PREDICTED: uncharacterized protein LOC105634263 [Jatropha curcas]
6 Hb_003166_040 0.1143237364 - - PREDICTED: probable indole-3-acetic acid-amido synthetase GH3.1 [Jatropha curcas]
7 Hb_127743_030 0.11668606 - - amino acid transporter, putative [Ricinus communis]
8 Hb_006006_070 0.1191927516 - - UDP-glucosyltransferase, putative [Ricinus communis]
9 Hb_006919_010 0.1231612799 - - PREDICTED: putative wall-associated receptor kinase-like 16 [Vitis vinifera]
10 Hb_011063_060 0.1245593187 - - PREDICTED: endochitinase-like [Jatropha curcas]
11 Hb_000556_140 0.1249018056 transcription factor TF Family: GRF PREDICTED: growth-regulating factor 9 [Jatropha curcas]
12 Hb_004079_110 0.1254678358 - - PREDICTED: uncharacterized protein LOC100257802 [Vitis vinifera]
13 Hb_005653_100 0.1294763665 - - hypothetical protein POPTR_0004s19580g [Populus trichocarpa]
14 Hb_000025_740 0.130154333 - - PREDICTED: protein TRANSPARENT TESTA 12 isoform X1 [Jatropha curcas]
15 Hb_000407_110 0.13195629 - - ripening-induced ACC oxidase [Carica papaya]
16 Hb_020902_020 0.1360403598 - - hypothetical protein JCGZ_07820 [Jatropha curcas]
17 Hb_008225_080 0.1371260304 - - PREDICTED: cytochrome P450 71A26-like [Jatropha curcas]
18 Hb_002374_110 0.1381091053 - - PREDICTED: uncharacterized protein LOC105638965 [Jatropha curcas]
19 Hb_001473_100 0.1385432802 - - chalcone synthase 1 [Jatropha curcas]
20 Hb_004055_080 0.1386878171 - - calmodulin binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000288_140 Hb_000288_140 Hb_001660_040 Hb_001660_040 Hb_000288_140--Hb_001660_040 Hb_001609_080 Hb_001609_080 Hb_000288_140--Hb_001609_080 Hb_058526_010 Hb_058526_010 Hb_000288_140--Hb_058526_010 Hb_000005_350 Hb_000005_350 Hb_000288_140--Hb_000005_350 Hb_003166_040 Hb_003166_040 Hb_000288_140--Hb_003166_040 Hb_127743_030 Hb_127743_030 Hb_000288_140--Hb_127743_030 Hb_001660_040--Hb_000005_350 Hb_010334_040 Hb_010334_040 Hb_001660_040--Hb_010334_040 Hb_005211_090 Hb_005211_090 Hb_001660_040--Hb_005211_090 Hb_000025_740 Hb_000025_740 Hb_001660_040--Hb_000025_740 Hb_011861_020 Hb_011861_020 Hb_001660_040--Hb_011861_020 Hb_005653_100 Hb_005653_100 Hb_001609_080--Hb_005653_100 Hb_000407_110 Hb_000407_110 Hb_001609_080--Hb_000407_110 Hb_006919_010 Hb_006919_010 Hb_001609_080--Hb_006919_010 Hb_020902_020 Hb_020902_020 Hb_001609_080--Hb_020902_020 Hb_111693_010 Hb_111693_010 Hb_001609_080--Hb_111693_010 Hb_058526_010--Hb_003166_040 Hb_058526_010--Hb_127743_030 Hb_004055_080 Hb_004055_080 Hb_058526_010--Hb_004055_080 Hb_007747_030 Hb_007747_030 Hb_058526_010--Hb_007747_030 Hb_007483_030 Hb_007483_030 Hb_058526_010--Hb_007483_030 Hb_002374_110 Hb_002374_110 Hb_058526_010--Hb_002374_110 Hb_000005_350--Hb_011861_020 Hb_000005_350--Hb_010334_040 Hb_000589_100 Hb_000589_100 Hb_000005_350--Hb_000589_100 Hb_000684_490 Hb_000684_490 Hb_000005_350--Hb_000684_490 Hb_116469_010 Hb_116469_010 Hb_000005_350--Hb_116469_010 Hb_001691_060 Hb_001691_060 Hb_000005_350--Hb_001691_060 Hb_003166_040--Hb_127743_030 Hb_027288_010 Hb_027288_010 Hb_003166_040--Hb_027288_010 Hb_003166_040--Hb_007483_030 Hb_003166_040--Hb_002374_110 Hb_007432_050 Hb_007432_050 Hb_003166_040--Hb_007432_050 Hb_127743_030--Hb_002374_110 Hb_127743_030--Hb_007432_050 Hb_127743_030--Hb_027288_010 Hb_127743_030--Hb_007483_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.216921 0.172261 0.13317 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.880764 0.0310411

CAGE analysis