Hb_033363_080

Information

Type -
Description -
Location Contig33363: 65416-66511
Sequence    

Annotation

kegg
ID rcu:RCOM_0705650
description Allene oxide cyclase 3, chloroplast precursor, putative (EC:5.3.99.6)
nr
ID XP_002524412.1
description Allene oxide cyclase 3, chloroplast precursor, putative [Ricinus communis]
swissprot
ID Q9LS01
description Allene oxide cyclase 3, chloroplastic OS=Arabidopsis thaliana GN=AOC3 PE=2 SV=1
trembl
ID B9SEJ3
description Allene oxide cyclase 3, chloroplast, putative OS=Ricinus communis GN=RCOM_0705650 PE=4 SV=1
Gene Ontology
ID GO:0009507
description allene oxide cyclase chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35013: 65508-65947
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_033363_080 0.0 - - Allene oxide cyclase 3, chloroplast precursor, putative [Ricinus communis]
2 Hb_004774_060 0.0713599466 - - -
3 Hb_011145_020 0.0724329966 - - PREDICTED: metalloendoproteinase 1-like [Pyrus x bretschneideri]
4 Hb_175968_010 0.0965152477 - - hypothetical protein JCGZ_21281 [Jatropha curcas]
5 Hb_000438_190 0.0992654081 - - PREDICTED: peroxidase 4-like [Jatropha curcas]
6 Hb_012796_050 0.1026080749 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase 1-deoxyxylulose-5-phosphate synthase, putative [Ricinus communis]
7 Hb_004055_180 0.1027571769 - - cell wall invertase [Manihot esculenta]
8 Hb_109673_010 0.1028883174 - - glutathione s-transferase, putative [Ricinus communis]
9 Hb_001279_220 0.105149249 - - protein binding protein, putative [Ricinus communis]
10 Hb_001691_060 0.1056712183 - - lipoxygenase, putative [Ricinus communis]
11 Hb_012239_080 0.1059862175 - - PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase homolog 4-like [Jatropha curcas]
12 Hb_004712_080 0.1067551817 - - PREDICTED: premnaspirodiene oxygenase-like [Jatropha curcas]
13 Hb_148914_010 0.1071031467 - - glutathione s-transferase, putative [Ricinus communis]
14 Hb_097908_010 0.1105006804 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 isoform X2 [Jatropha curcas]
15 Hb_000659_010 0.119753818 - - PREDICTED: plasma membrane ATPase 2-like isoform X1 [Jatropha curcas]
16 Hb_173448_010 0.1227083077 - - PREDICTED: galactose oxidase-like [Jatropha curcas]
17 Hb_004195_240 0.1260802926 - - Peroxidase 72 precursor, putative [Ricinus communis]
18 Hb_000563_610 0.1262155406 - - PREDICTED: putative E3 ubiquitin-protein ligase LIN-1 [Jatropha curcas]
19 Hb_002749_070 0.1263543358 - - PREDICTED: uncharacterized protein LOC105635941 [Jatropha curcas]
20 Hb_010407_120 0.1268806579 - - PREDICTED: glutathione transferase GST 23-like [Jatropha curcas]

Gene co-expression network

sample Hb_033363_080 Hb_033363_080 Hb_004774_060 Hb_004774_060 Hb_033363_080--Hb_004774_060 Hb_011145_020 Hb_011145_020 Hb_033363_080--Hb_011145_020 Hb_175968_010 Hb_175968_010 Hb_033363_080--Hb_175968_010 Hb_000438_190 Hb_000438_190 Hb_033363_080--Hb_000438_190 Hb_012796_050 Hb_012796_050 Hb_033363_080--Hb_012796_050 Hb_004055_180 Hb_004055_180 Hb_033363_080--Hb_004055_180 Hb_004774_060--Hb_175968_010 Hb_001279_220 Hb_001279_220 Hb_004774_060--Hb_001279_220 Hb_004774_060--Hb_004055_180 Hb_097908_010 Hb_097908_010 Hb_004774_060--Hb_097908_010 Hb_000659_010 Hb_000659_010 Hb_004774_060--Hb_000659_010 Hb_164283_010 Hb_164283_010 Hb_011145_020--Hb_164283_010 Hb_002749_070 Hb_002749_070 Hb_011145_020--Hb_002749_070 Hb_001691_060 Hb_001691_060 Hb_011145_020--Hb_001691_060 Hb_004544_070 Hb_004544_070 Hb_011145_020--Hb_004544_070 Hb_018591_010 Hb_018591_010 Hb_011145_020--Hb_018591_010 Hb_175968_010--Hb_001279_220 Hb_175968_010--Hb_000659_010 Hb_004222_010 Hb_004222_010 Hb_175968_010--Hb_004222_010 Hb_175968_010--Hb_097908_010 Hb_175968_010--Hb_004055_180 Hb_000438_190--Hb_004544_070 Hb_148914_010 Hb_148914_010 Hb_000438_190--Hb_148914_010 Hb_002232_370 Hb_002232_370 Hb_000438_190--Hb_002232_370 Hb_000438_190--Hb_002749_070 Hb_000438_190--Hb_011145_020 Hb_010407_120 Hb_010407_120 Hb_000438_190--Hb_010407_120 Hb_012796_050--Hb_148914_010 Hb_002048_010 Hb_002048_010 Hb_012796_050--Hb_002048_010 Hb_012796_050--Hb_002232_370 Hb_012796_050--Hb_000438_190 Hb_004712_080 Hb_004712_080 Hb_012796_050--Hb_004712_080 Hb_004055_180--Hb_097908_010 Hb_001464_010 Hb_001464_010 Hb_004055_180--Hb_001464_010 Hb_000563_610 Hb_000563_610 Hb_004055_180--Hb_000563_610 Hb_007417_020 Hb_007417_020 Hb_004055_180--Hb_007417_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.25686 2.81333 3.2356 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.104475 0 0 30.9306 2.34915

CAGE analysis