Hb_004445_090

Information

Type -
Description -
Location Contig4445: 150648-151691
Sequence    

Annotation

kegg
ID rcu:RCOM_0820830
description hypothetical protein
nr
ID XP_002525243.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SGX4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0820830 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004445_090 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000245_140 0.1117618445 - - PREDICTED: CASP-like protein 3A1 [Jatropha curcas]
3 Hb_000563_610 0.1144375226 - - PREDICTED: putative E3 ubiquitin-protein ligase LIN-1 [Jatropha curcas]
4 Hb_000204_030 0.1187639255 - - PREDICTED: TMV resistance protein N-like [Jatropha curcas]
5 Hb_002232_370 0.1241106371 - - PREDICTED: receptor-like protein kinase HAIKU2 [Jatropha curcas]
6 Hb_000739_130 0.1262768775 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000438_190 0.1272738246 - - PREDICTED: peroxidase 4-like [Jatropha curcas]
8 Hb_010407_120 0.1286416154 - - PREDICTED: glutathione transferase GST 23-like [Jatropha curcas]
9 Hb_002232_400 0.129389081 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH25-like [Jatropha curcas]
10 Hb_001366_250 0.1314733456 - - PREDICTED: mannan endo-1,4-beta-mannosidase 4-like [Jatropha curcas]
11 Hb_000648_120 0.134067561 - - PREDICTED: L-type lectin-domain containing receptor kinase IV.1 [Vitis vinifera]
12 Hb_007527_020 0.1343543685 - - PREDICTED: feruloyl CoA ortho-hydroxylase 1 [Jatropha curcas]
13 Hb_003205_030 0.1355291631 - - Pectinesterase inhibitor, putative [Ricinus communis]
14 Hb_001544_040 0.1384975585 - - PREDICTED: uncharacterized protein At1g66480-like [Populus euphratica]
15 Hb_012796_050 0.1402499322 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase 1-deoxyxylulose-5-phosphate synthase, putative [Ricinus communis]
16 Hb_148914_010 0.1406243326 - - glutathione s-transferase, putative [Ricinus communis]
17 Hb_000556_140 0.1408769251 transcription factor TF Family: GRF PREDICTED: growth-regulating factor 9 [Jatropha curcas]
18 Hb_000617_340 0.1417050458 - - respiratory burst oxidase B [Manihot esculenta]
19 Hb_002046_100 0.1421684089 transcription factor TF Family: MYB PREDICTED: transcription factor MYB82 [Jatropha curcas]
20 Hb_002965_020 0.1444109764 - - hypothetical protein JCGZ_18947 [Jatropha curcas]

Gene co-expression network

sample Hb_004445_090 Hb_004445_090 Hb_000245_140 Hb_000245_140 Hb_004445_090--Hb_000245_140 Hb_000563_610 Hb_000563_610 Hb_004445_090--Hb_000563_610 Hb_000204_030 Hb_000204_030 Hb_004445_090--Hb_000204_030 Hb_002232_370 Hb_002232_370 Hb_004445_090--Hb_002232_370 Hb_000739_130 Hb_000739_130 Hb_004445_090--Hb_000739_130 Hb_000438_190 Hb_000438_190 Hb_004445_090--Hb_000438_190 Hb_000245_140--Hb_002232_370 Hb_002965_020 Hb_002965_020 Hb_000245_140--Hb_002965_020 Hb_148914_010 Hb_148914_010 Hb_000245_140--Hb_148914_010 Hb_000976_020 Hb_000976_020 Hb_000245_140--Hb_000976_020 Hb_000648_120 Hb_000648_120 Hb_000245_140--Hb_000648_120 Hb_000245_140--Hb_000563_610 Hb_004055_180 Hb_004055_180 Hb_000563_610--Hb_004055_180 Hb_000563_610--Hb_000739_130 Hb_097908_010 Hb_097908_010 Hb_000563_610--Hb_097908_010 Hb_012796_050 Hb_012796_050 Hb_000563_610--Hb_012796_050 Hb_004774_060 Hb_004774_060 Hb_000563_610--Hb_004774_060 Hb_001104_200 Hb_001104_200 Hb_000204_030--Hb_001104_200 Hb_029510_110 Hb_029510_110 Hb_000204_030--Hb_029510_110 Hb_002046_100 Hb_002046_100 Hb_000204_030--Hb_002046_100 Hb_000204_030--Hb_000563_610 Hb_003428_100 Hb_003428_100 Hb_000204_030--Hb_003428_100 Hb_002232_370--Hb_000438_190 Hb_002232_370--Hb_148914_010 Hb_002232_370--Hb_002965_020 Hb_002232_400 Hb_002232_400 Hb_002232_370--Hb_002232_400 Hb_002232_370--Hb_012796_050 Hb_007532_050 Hb_007532_050 Hb_000739_130--Hb_007532_050 Hb_007527_020 Hb_007527_020 Hb_000739_130--Hb_007527_020 Hb_010407_120 Hb_010407_120 Hb_000739_130--Hb_010407_120 Hb_159769_010 Hb_159769_010 Hb_000739_130--Hb_159769_010 Hb_004544_070 Hb_004544_070 Hb_000438_190--Hb_004544_070 Hb_000438_190--Hb_148914_010 Hb_002749_070 Hb_002749_070 Hb_000438_190--Hb_002749_070 Hb_011145_020 Hb_011145_020 Hb_000438_190--Hb_011145_020 Hb_000438_190--Hb_010407_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.125902 0.559956 0.481996 0.697846 0.0828398 0.0184796
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0480434 0 0 7.33228 0.155072

CAGE analysis