Hb_003428_100

Information

Type -
Description -
Location Contig3428: 115570-118528
Sequence    

Annotation

kegg
ID rcu:RCOM_1063390
description Polygalacturonase precursor, putative (EC:3.2.1.67)
nr
ID XP_002521450.1
description Polygalacturonase precursor, putative [Ricinus communis]
swissprot
ID Q949Z1
description Polygalacturonase At1g48100 OS=Arabidopsis thaliana GN=At1g48100 PE=2 SV=1
trembl
ID B9S631
description Polygalacturonase, putative OS=Ricinus communis GN=RCOM_1063390 PE=3 SV=1
Gene Ontology
ID GO:0005576
description polygalacturonase at1g48100

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35801: 115363-117892
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003428_100 0.0 - - Polygalacturonase precursor, putative [Ricinus communis]
2 Hb_000204_030 0.1287653524 - - PREDICTED: TMV resistance protein N-like [Jatropha curcas]
3 Hb_029510_110 0.1488996347 - - PREDICTED: protein PLANT CADMIUM RESISTANCE 8-like [Jatropha curcas]
4 Hb_001104_200 0.1528339711 - - Phytosulfokine 3 precursor, putative [Theobroma cacao]
5 Hb_002046_100 0.1655363927 transcription factor TF Family: MYB PREDICTED: transcription factor MYB82 [Jatropha curcas]
6 Hb_002325_020 0.1682656641 - - zinc finger protein, putative [Ricinus communis]
7 Hb_004143_120 0.173971587 - - PREDICTED: serine/threonine-protein kinase CTR1 [Jatropha curcas]
8 Hb_000230_230 0.177350398 - - hydrolase, putative [Ricinus communis]
9 Hb_001268_330 0.1818016551 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
10 Hb_000098_310 0.1856235126 - - RecName: Full=Anthocyanidin 3-O-glucosyltransferase 1; AltName: Full=Flavonol 3-O-glucosyltransferase 1; AltName: Full=UDP-glucose flavonoid 3-O-glucosyltransferase 1 [Manihot esculenta]
11 Hb_012553_020 0.1862537146 - - hypothetical protein JCGZ_09282 [Jatropha curcas]
12 Hb_002006_140 0.1911476886 transcription factor TF Family: ERF hypothetical protein POPTR_0012s11030g [Populus trichocarpa]
13 Hb_000230_100 0.1915800544 - - PREDICTED: acyltransferase-like protein At1g54570, chloroplastic isoform X1 [Jatropha curcas]
14 Hb_000343_100 0.1954780636 - - PREDICTED: regulator of telomere elongation helicase 1 homolog [Jatropha curcas]
15 Hb_000007_110 0.1973003079 - - PREDICTED: peroxidase 11 [Jatropha curcas]
16 Hb_000563_610 0.1998393683 - - PREDICTED: putative E3 ubiquitin-protein ligase LIN-1 [Jatropha curcas]
17 Hb_005144_020 0.2033374379 transcription factor TF Family: MYB hypothetical protein POPTR_0009s01270g [Populus trichocarpa]
18 Hb_004445_090 0.2043615375 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001366_250 0.2055859553 - - PREDICTED: mannan endo-1,4-beta-mannosidase 4-like [Jatropha curcas]
20 Hb_003071_060 0.2064077315 - - PREDICTED: beta-galactosidase 15-like [Jatropha curcas]

Gene co-expression network

sample Hb_003428_100 Hb_003428_100 Hb_000204_030 Hb_000204_030 Hb_003428_100--Hb_000204_030 Hb_029510_110 Hb_029510_110 Hb_003428_100--Hb_029510_110 Hb_001104_200 Hb_001104_200 Hb_003428_100--Hb_001104_200 Hb_002046_100 Hb_002046_100 Hb_003428_100--Hb_002046_100 Hb_002325_020 Hb_002325_020 Hb_003428_100--Hb_002325_020 Hb_004143_120 Hb_004143_120 Hb_003428_100--Hb_004143_120 Hb_000204_030--Hb_001104_200 Hb_000204_030--Hb_029510_110 Hb_000204_030--Hb_002046_100 Hb_000563_610 Hb_000563_610 Hb_000204_030--Hb_000563_610 Hb_004445_090 Hb_004445_090 Hb_000204_030--Hb_004445_090 Hb_029510_110--Hb_001104_200 Hb_061195_010 Hb_061195_010 Hb_029510_110--Hb_061195_010 Hb_029510_110--Hb_000563_610 Hb_001366_250 Hb_001366_250 Hb_029510_110--Hb_001366_250 Hb_012239_080 Hb_012239_080 Hb_029510_110--Hb_012239_080 Hb_000230_230 Hb_000230_230 Hb_001104_200--Hb_000230_230 Hb_000934_170 Hb_000934_170 Hb_001104_200--Hb_000934_170 Hb_001104_200--Hb_000563_610 Hb_000580_070 Hb_000580_070 Hb_001104_200--Hb_000580_070 Hb_000245_140 Hb_000245_140 Hb_002046_100--Hb_000245_140 Hb_002046_100--Hb_000563_610 Hb_002046_100--Hb_004445_090 Hb_001168_010 Hb_001168_010 Hb_002046_100--Hb_001168_010 Hb_000648_120 Hb_000648_120 Hb_002046_100--Hb_000648_120 Hb_003071_060 Hb_003071_060 Hb_002325_020--Hb_003071_060 Hb_000010_120 Hb_000010_120 Hb_002325_020--Hb_000010_120 Hb_006478_180 Hb_006478_180 Hb_002325_020--Hb_006478_180 Hb_000025_020 Hb_000025_020 Hb_002325_020--Hb_000025_020 Hb_011382_030 Hb_011382_030 Hb_002325_020--Hb_011382_030 Hb_000343_100 Hb_000343_100 Hb_004143_120--Hb_000343_100 Hb_182680_010 Hb_182680_010 Hb_004143_120--Hb_182680_010 Hb_005389_190 Hb_005389_190 Hb_004143_120--Hb_005389_190 Hb_002233_040 Hb_002233_040 Hb_004143_120--Hb_002233_040 Hb_000181_020 Hb_000181_020 Hb_004143_120--Hb_000181_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.402315 1.71071 0.910441 0.877569 0.562354 0.3529
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.495524 0.61918 0.259089 16.1436 1.05804

CAGE analysis