Hb_011382_030

Information

Type -
Description -
Location Contig11382: 38552-39851
Sequence    

Annotation

kegg
ID rcu:RCOM_1383560
description Dehydration-responsive protein RD22 precursor, putative
nr
ID XP_002522128.1
description Dehydration-responsive protein RD22 precursor, putative [Ricinus communis]
swissprot
ID B9G9L9
description BURP domain-containing protein 17 OS=Oryza sativa subsp. japonica GN=BURP17 PE=2 SV=1
trembl
ID B9S812
description Dehydration-responsive protein RD22, putative OS=Ricinus communis GN=RCOM_1383560 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04153: 38611-38845
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011382_030 0.0 - - Dehydration-responsive protein RD22 precursor, putative [Ricinus communis]
2 Hb_002758_040 0.1087602344 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
3 Hb_145535_010 0.1177548859 - - PREDICTED: terpene synthase 10-like [Jatropha curcas]
4 Hb_003446_030 0.1256853417 - - hypothetical protein JCGZ_20198 [Jatropha curcas]
5 Hb_027402_120 0.1272039801 - - zinc finger protein, putative [Ricinus communis]
6 Hb_000141_210 0.1386479621 - - PREDICTED: 36.4 kDa proline-rich protein-like [Camelina sativa]
7 Hb_000160_230 0.1398284788 transcription factor TF Family: MYB PREDICTED: transcription factor MYB3-like [Jatropha curcas]
8 Hb_010712_020 0.1398376352 - - PREDICTED: caffeic acid 3-O-methyltransferase-like [Jatropha curcas]
9 Hb_000859_040 0.1416020829 - - Early nodulin 16 precursor, putative [Ricinus communis]
10 Hb_007810_140 0.1418710811 - - Ankyrin repeat-containing protein [Medicago truncatula]
11 Hb_004564_010 0.1428041427 - - receptor-kinase, putative [Ricinus communis]
12 Hb_001999_220 0.143566461 - - PREDICTED: cytochrome P450 86A1 [Jatropha curcas]
13 Hb_000488_040 0.1436775274 - - unnamed protein product [Vitis vinifera]
14 Hb_002900_020 0.1458404525 - - hypothetical protein POPTR_0008s06270g [Populus trichocarpa]
15 Hb_016172_010 0.146297232 - - hypothetical protein JCGZ_23602 [Jatropha curcas]
16 Hb_006196_020 0.1467758043 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 100-like [Populus euphratica]
17 Hb_001863_290 0.1476839213 - - PREDICTED: 7-deoxyloganetin glucosyltransferase-like [Jatropha curcas]
18 Hb_012652_020 0.1477535197 - - PREDICTED: probable carboxylesterase 18 [Jatropha curcas]
19 Hb_001410_090 0.1480946176 - - transferase, putative [Ricinus communis]
20 Hb_122025_010 0.1489377012 - - hypothetical protein POPTR_0003s052201g, partial [Populus trichocarpa]

Gene co-expression network

sample Hb_011382_030 Hb_011382_030 Hb_002758_040 Hb_002758_040 Hb_011382_030--Hb_002758_040 Hb_145535_010 Hb_145535_010 Hb_011382_030--Hb_145535_010 Hb_003446_030 Hb_003446_030 Hb_011382_030--Hb_003446_030 Hb_027402_120 Hb_027402_120 Hb_011382_030--Hb_027402_120 Hb_000141_210 Hb_000141_210 Hb_011382_030--Hb_000141_210 Hb_000160_230 Hb_000160_230 Hb_011382_030--Hb_000160_230 Hb_016172_010 Hb_016172_010 Hb_002758_040--Hb_016172_010 Hb_010712_020 Hb_010712_020 Hb_002758_040--Hb_010712_020 Hb_002758_040--Hb_000160_230 Hb_001999_220 Hb_001999_220 Hb_002758_040--Hb_001999_220 Hb_002758_040--Hb_027402_120 Hb_007810_140 Hb_007810_140 Hb_002758_040--Hb_007810_140 Hb_000419_080 Hb_000419_080 Hb_145535_010--Hb_000419_080 Hb_145535_010--Hb_003446_030 Hb_000488_040 Hb_000488_040 Hb_145535_010--Hb_000488_040 Hb_000859_040 Hb_000859_040 Hb_145535_010--Hb_000859_040 Hb_145535_010--Hb_007810_140 Hb_001410_090 Hb_001410_090 Hb_145535_010--Hb_001410_090 Hb_001032_060 Hb_001032_060 Hb_003446_030--Hb_001032_060 Hb_028013_010 Hb_028013_010 Hb_003446_030--Hb_028013_010 Hb_018709_010 Hb_018709_010 Hb_003446_030--Hb_018709_010 Hb_003446_030--Hb_000419_080 Hb_000445_020 Hb_000445_020 Hb_003446_030--Hb_000445_020 Hb_002534_080 Hb_002534_080 Hb_027402_120--Hb_002534_080 Hb_004564_010 Hb_004564_010 Hb_027402_120--Hb_004564_010 Hb_002615_050 Hb_002615_050 Hb_027402_120--Hb_002615_050 Hb_027402_120--Hb_028013_010 Hb_027402_120--Hb_000488_040 Hb_000243_330 Hb_000243_330 Hb_000141_210--Hb_000243_330 Hb_000141_210--Hb_028013_010 Hb_000025_250 Hb_000025_250 Hb_000141_210--Hb_000025_250 Hb_005464_040 Hb_005464_040 Hb_000141_210--Hb_005464_040 Hb_000563_080 Hb_000563_080 Hb_000141_210--Hb_000563_080 Hb_000141_210--Hb_018709_010 Hb_000160_230--Hb_007810_140 Hb_000160_230--Hb_000859_040 Hb_000160_230--Hb_002615_050 Hb_006196_020 Hb_006196_020 Hb_000160_230--Hb_006196_020 Hb_011824_010 Hb_011824_010 Hb_000160_230--Hb_011824_010 Hb_000160_230--Hb_010712_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.275642 2.47674 0.0718705 0.252831 0.194652 0.366016
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 20.2993 0.0683849

CAGE analysis