Hb_000141_210

Information

Type -
Description -
Location Contig141: 262488-266750
Sequence    

Annotation

kegg
ID rcu:RCOM_0283490
description 14 kDa proline-rich protein DC2.15 precursor, putative
nr
ID XP_010466481.1
description PREDICTED: 36.4 kDa proline-rich protein-like [Camelina sativa]
swissprot
ID Q00451
description 36.4 kDa proline-rich protein OS=Solanum lycopersicum GN=TPRP-F1 PE=2 SV=1
trembl
ID B9T4X3
description 14 kDa proline-rich protein DC2.15, putative OS=Ricinus communis GN=RCOM_0283490 PE=4 SV=1
Gene Ontology
ID GO:0008289
description kda proline-rich

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11092: 266221-266949
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000141_210 0.0 - - PREDICTED: 36.4 kDa proline-rich protein-like [Camelina sativa]
2 Hb_000243_330 0.0808469128 - - conserved hypothetical protein [Ricinus communis]
3 Hb_028013_010 0.0921218773 - - alcohol dehydrogenase, putative [Ricinus communis]
4 Hb_000025_250 0.1001256394 - - PREDICTED: flavonoid 3',5'-hydroxylase 2-like [Jatropha curcas]
5 Hb_005464_040 0.104261771 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
6 Hb_000563_080 0.1071684585 - - -
7 Hb_018709_010 0.1071777064 - - PREDICTED: cytochrome P450 CYP82D47-like [Jatropha curcas]
8 Hb_004254_070 0.1075874547 transcription factor TF Family: NAC hypothetical protein POPTR_0015s03700g [Populus trichocarpa]
9 Hb_001301_020 0.1079817367 - - hypothetical protein JCGZ_06575 [Jatropha curcas]
10 Hb_014034_020 0.1091772412 - - hypothetical protein POPTR_0075s00200g, partial [Populus trichocarpa]
11 Hb_003188_020 0.1102532277 - - chitinase, putative [Ricinus communis]
12 Hb_020141_020 0.1105486388 - - -
13 Hb_027402_120 0.1112083856 - - zinc finger protein, putative [Ricinus communis]
14 Hb_039655_010 0.1114718693 - - PREDICTED: BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1-like [Malus domestica]
15 Hb_000446_100 0.1127554042 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4-like [Jatropha curcas]
16 Hb_004204_160 0.1159650559 - - S-locus-specific glycoprotein S6 precursor, putative [Ricinus communis]
17 Hb_000500_190 0.1175990382 - - hypothetical protein JCGZ_21655 [Jatropha curcas]
18 Hb_100786_010 0.117696513 - - hypothetical protein B456_008G202600 [Gossypium raimondii]
19 Hb_000388_160 0.1207415081 - - xyloglucan endo-1 family protein [Populus trichocarpa]
20 Hb_000589_280 0.1220231627 - - PREDICTED: glycerol-3-phosphate acyltransferase 5 [Jatropha curcas]

Gene co-expression network

sample Hb_000141_210 Hb_000141_210 Hb_000243_330 Hb_000243_330 Hb_000141_210--Hb_000243_330 Hb_028013_010 Hb_028013_010 Hb_000141_210--Hb_028013_010 Hb_000025_250 Hb_000025_250 Hb_000141_210--Hb_000025_250 Hb_005464_040 Hb_005464_040 Hb_000141_210--Hb_005464_040 Hb_000563_080 Hb_000563_080 Hb_000141_210--Hb_000563_080 Hb_018709_010 Hb_018709_010 Hb_000141_210--Hb_018709_010 Hb_027402_120 Hb_027402_120 Hb_000243_330--Hb_027402_120 Hb_039655_010 Hb_039655_010 Hb_000243_330--Hb_039655_010 Hb_000243_330--Hb_005464_040 Hb_000243_330--Hb_028013_010 Hb_042664_010 Hb_042664_010 Hb_000243_330--Hb_042664_010 Hb_028013_010--Hb_018709_010 Hb_020141_020 Hb_020141_020 Hb_028013_010--Hb_020141_020 Hb_001032_060 Hb_001032_060 Hb_028013_010--Hb_001032_060 Hb_028013_010--Hb_000025_250 Hb_100786_010 Hb_100786_010 Hb_028013_010--Hb_100786_010 Hb_000419_080 Hb_000419_080 Hb_028013_010--Hb_000419_080 Hb_014034_020 Hb_014034_020 Hb_000025_250--Hb_014034_020 Hb_004254_070 Hb_004254_070 Hb_000025_250--Hb_004254_070 Hb_000025_250--Hb_018709_010 Hb_000025_250--Hb_020141_020 Hb_000025_250--Hb_005464_040 Hb_000025_250--Hb_000563_080 Hb_005464_040--Hb_000563_080 Hb_001301_020 Hb_001301_020 Hb_005464_040--Hb_001301_020 Hb_003188_020 Hb_003188_020 Hb_005464_040--Hb_003188_020 Hb_166232_010 Hb_166232_010 Hb_005464_040--Hb_166232_010 Hb_000446_100 Hb_000446_100 Hb_005464_040--Hb_000446_100 Hb_000563_080--Hb_001301_020 Hb_000563_080--Hb_003188_020 Hb_000563_080--Hb_166232_010 Hb_000563_080--Hb_004254_070 Hb_000563_080--Hb_000446_100 Hb_018709_010--Hb_020141_020 Hb_018709_010--Hb_100786_010 Hb_018709_010--Hb_001032_060 Hb_018709_010--Hb_000419_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.21709 0.72039 0.127285 0.183089 0.0788785 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 14.155 0

CAGE analysis