Hb_027402_120

Information

Type -
Description -
Location Contig27402: 88613-90370
Sequence    

Annotation

kegg
ID rcu:RCOM_1471860
description zinc finger protein, putative
nr
ID XP_002514748.1
description zinc finger protein, putative [Ricinus communis]
swissprot
ID Q9CA68
description GDSL esterase/lipase At1g74460 OS=Arabidopsis thaliana GN=At1g74460 PE=2 SV=1
trembl
ID B9RLX9
description Zinc finger protein, putative OS=Ricinus communis GN=RCOM_1471860 PE=4 SV=1
Gene Ontology
ID GO:0016788
description gdsl esterase lipase at1g74460

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28705: 88775-89339
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_027402_120 0.0 - - zinc finger protein, putative [Ricinus communis]
2 Hb_002534_080 0.078522089 - - zinc finger protein, putative [Ricinus communis]
3 Hb_004564_010 0.0935293384 - - receptor-kinase, putative [Ricinus communis]
4 Hb_002615_050 0.0944829982 - - ATP-binding cassette transporter, putative [Ricinus communis]
5 Hb_028013_010 0.0964242826 - - alcohol dehydrogenase, putative [Ricinus communis]
6 Hb_000488_040 0.0969530115 - - unnamed protein product [Vitis vinifera]
7 Hb_002758_040 0.0972705623 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
8 Hb_011671_380 0.0996982075 - - Blue copper protein precursor, putative [Ricinus communis]
9 Hb_145535_010 0.0999640889 - - PREDICTED: terpene synthase 10-like [Jatropha curcas]
10 Hb_018709_010 0.1011960236 - - PREDICTED: cytochrome P450 CYP82D47-like [Jatropha curcas]
11 Hb_007810_140 0.1026491179 - - Ankyrin repeat-containing protein [Medicago truncatula]
12 Hb_000160_230 0.1033040799 transcription factor TF Family: MYB PREDICTED: transcription factor MYB3-like [Jatropha curcas]
13 Hb_000243_330 0.1045824073 - - conserved hypothetical protein [Ricinus communis]
14 Hb_006196_020 0.1047111044 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 100-like [Populus euphratica]
15 Hb_000589_280 0.1050455891 - - PREDICTED: glycerol-3-phosphate acyltransferase 5 [Jatropha curcas]
16 Hb_005464_040 0.105568689 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
17 Hb_002900_020 0.1066711761 - - hypothetical protein POPTR_0008s06270g [Populus trichocarpa]
18 Hb_100786_010 0.1074831406 - - hypothetical protein B456_008G202600 [Gossypium raimondii]
19 Hb_178389_020 0.1094177949 - - PREDICTED: cytochrome P450 86B1-like [Jatropha curcas]
20 Hb_042664_010 0.1101477306 - - hypothetical protein POPTR_0001s07640g, partial [Populus trichocarpa]

Gene co-expression network

sample Hb_027402_120 Hb_027402_120 Hb_002534_080 Hb_002534_080 Hb_027402_120--Hb_002534_080 Hb_004564_010 Hb_004564_010 Hb_027402_120--Hb_004564_010 Hb_002615_050 Hb_002615_050 Hb_027402_120--Hb_002615_050 Hb_028013_010 Hb_028013_010 Hb_027402_120--Hb_028013_010 Hb_000488_040 Hb_000488_040 Hb_027402_120--Hb_000488_040 Hb_002758_040 Hb_002758_040 Hb_027402_120--Hb_002758_040 Hb_042664_010 Hb_042664_010 Hb_002534_080--Hb_042664_010 Hb_005464_040 Hb_005464_040 Hb_002534_080--Hb_005464_040 Hb_000025_250 Hb_000025_250 Hb_002534_080--Hb_000025_250 Hb_001901_090 Hb_001901_090 Hb_002534_080--Hb_001901_090 Hb_002534_080--Hb_002615_050 Hb_178389_020 Hb_178389_020 Hb_004564_010--Hb_178389_020 Hb_107258_010 Hb_107258_010 Hb_004564_010--Hb_107258_010 Hb_001442_080 Hb_001442_080 Hb_004564_010--Hb_001442_080 Hb_001863_290 Hb_001863_290 Hb_004564_010--Hb_001863_290 Hb_004564_010--Hb_002615_050 Hb_001288_010 Hb_001288_010 Hb_004564_010--Hb_001288_010 Hb_007810_140 Hb_007810_140 Hb_002615_050--Hb_007810_140 Hb_000160_230 Hb_000160_230 Hb_002615_050--Hb_000160_230 Hb_006196_020 Hb_006196_020 Hb_002615_050--Hb_006196_020 Hb_011824_010 Hb_011824_010 Hb_002615_050--Hb_011824_010 Hb_000859_040 Hb_000859_040 Hb_002615_050--Hb_000859_040 Hb_139460_010 Hb_139460_010 Hb_002615_050--Hb_139460_010 Hb_018709_010 Hb_018709_010 Hb_028013_010--Hb_018709_010 Hb_020141_020 Hb_020141_020 Hb_028013_010--Hb_020141_020 Hb_001032_060 Hb_001032_060 Hb_028013_010--Hb_001032_060 Hb_028013_010--Hb_000025_250 Hb_100786_010 Hb_100786_010 Hb_028013_010--Hb_100786_010 Hb_000419_080 Hb_000419_080 Hb_028013_010--Hb_000419_080 Hb_004592_020 Hb_004592_020 Hb_000488_040--Hb_004592_020 Hb_002900_020 Hb_002900_020 Hb_000488_040--Hb_002900_020 Hb_000488_040--Hb_001032_060 Hb_000488_040--Hb_000419_080 Hb_000488_040--Hb_018709_010 Hb_005747_020 Hb_005747_020 Hb_000488_040--Hb_005747_020 Hb_016172_010 Hb_016172_010 Hb_002758_040--Hb_016172_010 Hb_010712_020 Hb_010712_020 Hb_002758_040--Hb_010712_020 Hb_002758_040--Hb_000160_230 Hb_001999_220 Hb_001999_220 Hb_002758_040--Hb_001999_220 Hb_002758_040--Hb_007810_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0390321 0.572273 0.0240158 0.16983 0 0.0160567
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0357573 0 0 6.64729 0

CAGE analysis