Hb_000243_330

Information

Type -
Description -
Location Contig243: 299084-299431
Sequence    

Annotation

kegg
ID rcu:RCOM_0291710
description hypothetical protein
nr
ID XP_002531510.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SZU1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0291710 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25401: 297767-298137
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000243_330 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000141_210 0.0808469128 - - PREDICTED: 36.4 kDa proline-rich protein-like [Camelina sativa]
3 Hb_027402_120 0.1045824073 - - zinc finger protein, putative [Ricinus communis]
4 Hb_039655_010 0.1069496806 - - PREDICTED: BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1-like [Malus domestica]
5 Hb_005464_040 0.122981255 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
6 Hb_028013_010 0.1289876561 - - alcohol dehydrogenase, putative [Ricinus communis]
7 Hb_042664_010 0.1306452738 - - hypothetical protein POPTR_0001s07640g, partial [Populus trichocarpa]
8 Hb_002534_080 0.1308173815 - - zinc finger protein, putative [Ricinus communis]
9 Hb_000025_250 0.1327892691 - - PREDICTED: flavonoid 3',5'-hydroxylase 2-like [Jatropha curcas]
10 Hb_005356_010 0.1337443665 - - hypothetical protein POPTR_0003s16550g [Populus trichocarpa]
11 Hb_004564_010 0.1348722365 - - receptor-kinase, putative [Ricinus communis]
12 Hb_002615_050 0.1362477275 - - ATP-binding cassette transporter, putative [Ricinus communis]
13 Hb_018709_010 0.1362962554 - - PREDICTED: cytochrome P450 CYP82D47-like [Jatropha curcas]
14 Hb_000589_280 0.1366538604 - - PREDICTED: glycerol-3-phosphate acyltransferase 5 [Jatropha curcas]
15 Hb_000563_080 0.1368720879 - - -
16 Hb_178389_020 0.1370555956 - - PREDICTED: cytochrome P450 86B1-like [Jatropha curcas]
17 Hb_001901_090 0.1372368701 - - metal ion binding protein, putative [Ricinus communis]
18 Hb_016172_010 0.1380307795 - - hypothetical protein JCGZ_23602 [Jatropha curcas]
19 Hb_001301_020 0.1383918326 - - hypothetical protein JCGZ_06575 [Jatropha curcas]
20 Hb_000462_100 0.1394118224 - - Leucoanthocyanidin dioxygenase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000243_330 Hb_000243_330 Hb_000141_210 Hb_000141_210 Hb_000243_330--Hb_000141_210 Hb_027402_120 Hb_027402_120 Hb_000243_330--Hb_027402_120 Hb_039655_010 Hb_039655_010 Hb_000243_330--Hb_039655_010 Hb_005464_040 Hb_005464_040 Hb_000243_330--Hb_005464_040 Hb_028013_010 Hb_028013_010 Hb_000243_330--Hb_028013_010 Hb_042664_010 Hb_042664_010 Hb_000243_330--Hb_042664_010 Hb_000141_210--Hb_028013_010 Hb_000025_250 Hb_000025_250 Hb_000141_210--Hb_000025_250 Hb_000141_210--Hb_005464_040 Hb_000563_080 Hb_000563_080 Hb_000141_210--Hb_000563_080 Hb_018709_010 Hb_018709_010 Hb_000141_210--Hb_018709_010 Hb_002534_080 Hb_002534_080 Hb_027402_120--Hb_002534_080 Hb_004564_010 Hb_004564_010 Hb_027402_120--Hb_004564_010 Hb_002615_050 Hb_002615_050 Hb_027402_120--Hb_002615_050 Hb_027402_120--Hb_028013_010 Hb_000488_040 Hb_000488_040 Hb_027402_120--Hb_000488_040 Hb_002758_040 Hb_002758_040 Hb_027402_120--Hb_002758_040 Hb_004204_160 Hb_004204_160 Hb_039655_010--Hb_004204_160 Hb_005356_010 Hb_005356_010 Hb_039655_010--Hb_005356_010 Hb_000281_200 Hb_000281_200 Hb_039655_010--Hb_000281_200 Hb_178389_020 Hb_178389_020 Hb_039655_010--Hb_178389_020 Hb_039655_010--Hb_004564_010 Hb_001134_040 Hb_001134_040 Hb_039655_010--Hb_001134_040 Hb_005464_040--Hb_000563_080 Hb_001301_020 Hb_001301_020 Hb_005464_040--Hb_001301_020 Hb_005464_040--Hb_000025_250 Hb_003188_020 Hb_003188_020 Hb_005464_040--Hb_003188_020 Hb_166232_010 Hb_166232_010 Hb_005464_040--Hb_166232_010 Hb_000446_100 Hb_000446_100 Hb_005464_040--Hb_000446_100 Hb_028013_010--Hb_018709_010 Hb_020141_020 Hb_020141_020 Hb_028013_010--Hb_020141_020 Hb_001032_060 Hb_001032_060 Hb_028013_010--Hb_001032_060 Hb_028013_010--Hb_000025_250 Hb_100786_010 Hb_100786_010 Hb_028013_010--Hb_100786_010 Hb_000419_080 Hb_000419_080 Hb_028013_010--Hb_000419_080 Hb_006196_020 Hb_006196_020 Hb_042664_010--Hb_006196_020 Hb_001901_090 Hb_001901_090 Hb_042664_010--Hb_001901_090 Hb_042664_010--Hb_002615_050 Hb_039342_030 Hb_039342_030 Hb_042664_010--Hb_039342_030 Hb_042664_010--Hb_002534_080 Hb_008705_070 Hb_008705_070 Hb_042664_010--Hb_008705_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.295155 0.641173 0.0891555 0.279853 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 9.70511 0

CAGE analysis