Hb_004204_160

Information

Type -
Description -
Location Contig4204: 115510-118588
Sequence    

Annotation

kegg
ID rcu:RCOM_1470510
description S-locus-specific glycoprotein S6 precursor, putative
nr
ID XP_002514693.1
description S-locus-specific glycoprotein S6 precursor, putative [Ricinus communis]
swissprot
ID O64477
description G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130 OS=Arabidopsis thaliana GN=At2g19130 PE=2 SV=1
trembl
ID B9RLS4
description Serine/threonine-protein kinase OS=Ricinus communis GN=RCOM_1470510 PE=3 SV=1
Gene Ontology
ID GO:0000166
description s-locus-specific glycoprotein s6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41539: 117355-117595
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004204_160 0.0 - - S-locus-specific glycoprotein S6 precursor, putative [Ricinus communis]
2 Hb_039655_010 0.0768917668 - - PREDICTED: BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1-like [Malus domestica]
3 Hb_001134_040 0.0960041823 - - PREDICTED: EG45-like domain containing protein [Jatropha curcas]
4 Hb_004097_080 0.0984450647 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 isoform X1 [Nicotiana tomentosiformis]
5 Hb_000712_070 0.1018406046 - - conserved hypothetical protein [Ricinus communis]
6 Hb_058620_010 0.1020776765 - - cytochrome P450, putative [Ricinus communis]
7 Hb_003090_070 0.1042974389 - - PREDICTED: laccase-7 [Jatropha curcas]
8 Hb_009780_060 0.1047781117 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase geranyl geranyl pyrophosphate synthase, putative [Ricinus communis]
9 Hb_002805_230 0.1078884041 - - PREDICTED: protein TRANSPARENT TESTA 12 isoform X1 [Jatropha curcas]
10 Hb_000281_200 0.1081256145 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 [Jatropha curcas]
11 Hb_000155_140 0.1103497618 - - o-methyltransferase, putative [Ricinus communis]
12 Hb_000229_080 0.1112780427 - - PREDICTED: cytochrome P450 CYP82D47-like [Jatropha curcas]
13 Hb_002553_170 0.11197859 - - PREDICTED: early nodulin-75-like [Jatropha curcas]
14 Hb_022250_050 0.1123259949 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000025_250 0.1132221309 - - PREDICTED: flavonoid 3',5'-hydroxylase 2-like [Jatropha curcas]
16 Hb_000500_190 0.1138790201 - - hypothetical protein JCGZ_21655 [Jatropha curcas]
17 Hb_000446_100 0.1150017129 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4-like [Jatropha curcas]
18 Hb_004254_070 0.1157630832 transcription factor TF Family: NAC hypothetical protein POPTR_0015s03700g [Populus trichocarpa]
19 Hb_000141_210 0.1159650559 - - PREDICTED: 36.4 kDa proline-rich protein-like [Camelina sativa]
20 Hb_001301_020 0.1170156117 - - hypothetical protein JCGZ_06575 [Jatropha curcas]

Gene co-expression network

sample Hb_004204_160 Hb_004204_160 Hb_039655_010 Hb_039655_010 Hb_004204_160--Hb_039655_010 Hb_001134_040 Hb_001134_040 Hb_004204_160--Hb_001134_040 Hb_004097_080 Hb_004097_080 Hb_004204_160--Hb_004097_080 Hb_000712_070 Hb_000712_070 Hb_004204_160--Hb_000712_070 Hb_058620_010 Hb_058620_010 Hb_004204_160--Hb_058620_010 Hb_003090_070 Hb_003090_070 Hb_004204_160--Hb_003090_070 Hb_005356_010 Hb_005356_010 Hb_039655_010--Hb_005356_010 Hb_000281_200 Hb_000281_200 Hb_039655_010--Hb_000281_200 Hb_178389_020 Hb_178389_020 Hb_039655_010--Hb_178389_020 Hb_004564_010 Hb_004564_010 Hb_039655_010--Hb_004564_010 Hb_039655_010--Hb_001134_040 Hb_002805_230 Hb_002805_230 Hb_001134_040--Hb_002805_230 Hb_001134_040--Hb_058620_010 Hb_001134_040--Hb_003090_070 Hb_001134_040--Hb_000712_070 Hb_007417_020 Hb_007417_020 Hb_001134_040--Hb_007417_020 Hb_135392_010 Hb_135392_010 Hb_001134_040--Hb_135392_010 Hb_004097_080--Hb_058620_010 Hb_004097_080--Hb_135392_010 Hb_004097_080--Hb_000712_070 Hb_039562_010 Hb_039562_010 Hb_004097_080--Hb_039562_010 Hb_003334_080 Hb_003334_080 Hb_004097_080--Hb_003334_080 Hb_004097_080--Hb_001134_040 Hb_000712_070--Hb_002805_230 Hb_000712_070--Hb_003090_070 Hb_000141_070 Hb_000141_070 Hb_000712_070--Hb_000141_070 Hb_000712_070--Hb_003334_080 Hb_004693_010 Hb_004693_010 Hb_000712_070--Hb_004693_010 Hb_007483_040 Hb_007483_040 Hb_000712_070--Hb_007483_040 Hb_058620_010--Hb_000712_070 Hb_058620_010--Hb_002805_230 Hb_058620_010--Hb_135392_010 Hb_058620_010--Hb_003090_070 Hb_003090_070--Hb_002805_230 Hb_003090_070--Hb_004693_010 Hb_000059_100 Hb_000059_100 Hb_003090_070--Hb_000059_100 Hb_007532_050 Hb_007532_050 Hb_003090_070--Hb_007532_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0072172 0.111782 0.0495233 0.0468362 0.0139791 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0245981 2.75654 0.0274306

CAGE analysis