Hb_005389_190

Information

Type -
Description -
Location Contig5389: 191855-196225
Sequence    

Annotation

kegg
ID rcu:RCOM_1408070
description glutamate receptor 2 plant, putative
nr
ID XP_002523581.1
description glutamate receptor 2 plant, putative [Ricinus communis]
swissprot
ID Q93YT1
description Glutamate receptor 3.2 OS=Arabidopsis thaliana GN=GLR3.2 PE=1 SV=2
trembl
ID B9SC62
description Glutamate receptor 2 plant, putative OS=Ricinus communis GN=RCOM_1408070 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005389_190 0.0 - - glutamate receptor 2 plant, putative [Ricinus communis]
2 Hb_112203_010 0.187359763 - - -
3 Hb_003517_010 0.1926878053 - - PREDICTED: ABC transporter C family member 3-like isoform X1 [Jatropha curcas]
4 Hb_004143_120 0.1943257286 - - PREDICTED: serine/threonine-protein kinase CTR1 [Jatropha curcas]
5 Hb_000343_100 0.1980445404 - - PREDICTED: regulator of telomere elongation helicase 1 homolog [Jatropha curcas]
6 Hb_144004_010 0.2002862923 - - hypothetical protein JCGZ_01009 [Jatropha curcas]
7 Hb_002006_140 0.2019081727 transcription factor TF Family: ERF hypothetical protein POPTR_0012s11030g [Populus trichocarpa]
8 Hb_000165_210 0.2091506854 - - PREDICTED: trihelix transcription factor ASIL2 isoform X2 [Jatropha curcas]
9 Hb_003428_100 0.2112068344 - - Polygalacturonase precursor, putative [Ricinus communis]
10 Hb_001649_040 0.2153887377 - - Polygalacturonase precursor, putative [Ricinus communis]
11 Hb_012553_020 0.2208094395 - - hypothetical protein JCGZ_09282 [Jatropha curcas]
12 Hb_001504_220 0.2219350261 - - ABC transporter family protein [Hevea brasiliensis]
13 Hb_000384_050 0.2295336807 - - hypothetical protein POPTR_0077s002402g, partial [Populus trichocarpa]
14 Hb_001004_100 0.2307846137 - - ATP binding protein, putative [Ricinus communis]
15 Hb_002233_040 0.236886391 - - PREDICTED: uncharacterized protein LOC105629659 [Jatropha curcas]
16 Hb_000061_090 0.2386882846 - - hypothetical protein B456_003G0981001, partial [Gossypium raimondii]
17 Hb_029904_010 0.2408069914 - - PREDICTED: uncharacterized protein LOC105635075 [Jatropha curcas]
18 Hb_002960_170 0.2415586912 - - PREDICTED: probable receptor-like serine/threonine-protein kinase At5g57670 [Jatropha curcas]
19 Hb_008692_010 0.243255587 - - putative polyol transported protein 2 [Hevea brasiliensis]
20 Hb_027760_090 0.2453659451 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_005389_190 Hb_005389_190 Hb_112203_010 Hb_112203_010 Hb_005389_190--Hb_112203_010 Hb_003517_010 Hb_003517_010 Hb_005389_190--Hb_003517_010 Hb_004143_120 Hb_004143_120 Hb_005389_190--Hb_004143_120 Hb_000343_100 Hb_000343_100 Hb_005389_190--Hb_000343_100 Hb_144004_010 Hb_144004_010 Hb_005389_190--Hb_144004_010 Hb_002006_140 Hb_002006_140 Hb_005389_190--Hb_002006_140 Hb_008692_010 Hb_008692_010 Hb_112203_010--Hb_008692_010 Hb_001504_220 Hb_001504_220 Hb_112203_010--Hb_001504_220 Hb_025526_010 Hb_025526_010 Hb_112203_010--Hb_025526_010 Hb_006096_020 Hb_006096_020 Hb_112203_010--Hb_006096_020 Hb_056101_010 Hb_056101_010 Hb_112203_010--Hb_056101_010 Hb_008749_090 Hb_008749_090 Hb_003517_010--Hb_008749_090 Hb_149515_010 Hb_149515_010 Hb_003517_010--Hb_149515_010 Hb_000816_020 Hb_000816_020 Hb_003517_010--Hb_000816_020 Hb_003517_010--Hb_006096_020 Hb_029904_010 Hb_029904_010 Hb_003517_010--Hb_029904_010 Hb_004143_120--Hb_000343_100 Hb_182680_010 Hb_182680_010 Hb_004143_120--Hb_182680_010 Hb_003428_100 Hb_003428_100 Hb_004143_120--Hb_003428_100 Hb_002233_040 Hb_002233_040 Hb_004143_120--Hb_002233_040 Hb_000181_020 Hb_000181_020 Hb_004143_120--Hb_000181_020 Hb_003813_120 Hb_003813_120 Hb_000343_100--Hb_003813_120 Hb_000384_050 Hb_000384_050 Hb_000343_100--Hb_000384_050 Hb_000343_100--Hb_000181_020 Hb_000347_110 Hb_000347_110 Hb_000343_100--Hb_000347_110 Hb_000098_310 Hb_000098_310 Hb_000343_100--Hb_000098_310 Hb_000363_470 Hb_000363_470 Hb_144004_010--Hb_000363_470 Hb_144004_010--Hb_003517_010 Hb_144004_010--Hb_112203_010 Hb_001675_230 Hb_001675_230 Hb_144004_010--Hb_001675_230 Hb_000666_020 Hb_000666_020 Hb_144004_010--Hb_000666_020 Hb_002006_140--Hb_003428_100 Hb_112082_030 Hb_112082_030 Hb_002006_140--Hb_112082_030 Hb_001250_140 Hb_001250_140 Hb_002006_140--Hb_001250_140 Hb_001045_050 Hb_001045_050 Hb_002006_140--Hb_001045_050 Hb_002311_240 Hb_002311_240 Hb_002006_140--Hb_002311_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0686769 1.64439 0.194766 0.28471 0.0417563 0.302973
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.5782 0.701357 0.538304 8.76817 1.79948

CAGE analysis