Hb_003517_010

Information

Type -
Description -
Location Contig3517: 31105-41989
Sequence    

Annotation

kegg
ID pop:POPTR_0001s37340g
description POPTRDRAFT_798148; ABC transporter family protein
nr
ID XP_012070981.1
description PREDICTED: ABC transporter C family member 3-like isoform X1 [Jatropha curcas]
swissprot
ID Q9LK64
description ABC transporter C family member 3 OS=Arabidopsis thaliana GN=ABCC3 PE=1 SV=1
trembl
ID B9GJX7
description ABC transporter family protein OS=Populus trichocarpa GN=POPTR_0001s37340g PE=3 SV=1
Gene Ontology
ID GO:0016021
description abc transporter c family member 3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36523: 40975-41399 , PASA_asmbl_36524: 34728-49628 , PASA_asmbl_36528: 32471-60725 , PASA_asmbl_36529: 41822-42042 , PASA_asmbl_36531: 32471-45426
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003517_010 0.0 - - PREDICTED: ABC transporter C family member 3-like isoform X1 [Jatropha curcas]
2 Hb_008749_090 0.1759125592 - - hypothetical protein CICLE_v10017161mg [Citrus clementina]
3 Hb_149515_010 0.1865964081 - - multidrug resistance-associated protein 2, 6 (mrp2, 6), abc-transoprter, putative [Ricinus communis]
4 Hb_005389_190 0.1926878053 - - glutamate receptor 2 plant, putative [Ricinus communis]
5 Hb_000816_020 0.2014453994 desease resistance Gene Name: NB-ARC unnamed protein product [Coffea canephora]
6 Hb_006096_020 0.202584904 - - Os06g0343500 [Oryza sativa Japonica Group]
7 Hb_029904_010 0.2031078161 - - PREDICTED: uncharacterized protein LOC105635075 [Jatropha curcas]
8 Hb_159198_010 0.2071227667 - - hypothetical protein VITISV_033829 [Vitis vinifera]
9 Hb_001086_030 0.2129968141 - - Disease resistance protein RPS5, putative [Ricinus communis]
10 Hb_006700_040 0.2134190591 - - PREDICTED: vacuolar-sorting receptor 6-like [Jatropha curcas]
11 Hb_000343_100 0.2206878409 - - PREDICTED: regulator of telomere elongation helicase 1 homolog [Jatropha curcas]
12 Hb_000216_030 0.2231272583 - - aldehyde oxidase, putative [Ricinus communis]
13 Hb_112203_010 0.2289019733 - - -
14 Hb_074506_010 0.229677997 - - JHL25H03.10 [Jatropha curcas]
15 Hb_001123_010 0.2362430167 - - conserved hypothetical protein [Ricinus communis]
16 Hb_009848_050 0.2403603482 - - PREDICTED: proline-rich receptor-like protein kinase PERK13 [Elaeis guineensis]
17 Hb_000181_020 0.2415677223 - - PREDICTED: D-amino-acid transaminase, chloroplastic-like [Jatropha curcas]
18 Hb_041184_010 0.2424348584 desease resistance Gene Name: NB-ARC Disease resistance protein RPS5, putative [Ricinus communis]
19 Hb_000649_180 0.2436151189 - - PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase homolog 4-like [Jatropha curcas]
20 Hb_006916_190 0.2438736808 - - ubiquitin-protein ligase, putative [Ricinus communis]

Gene co-expression network

sample Hb_003517_010 Hb_003517_010 Hb_008749_090 Hb_008749_090 Hb_003517_010--Hb_008749_090 Hb_149515_010 Hb_149515_010 Hb_003517_010--Hb_149515_010 Hb_005389_190 Hb_005389_190 Hb_003517_010--Hb_005389_190 Hb_000816_020 Hb_000816_020 Hb_003517_010--Hb_000816_020 Hb_006096_020 Hb_006096_020 Hb_003517_010--Hb_006096_020 Hb_029904_010 Hb_029904_010 Hb_003517_010--Hb_029904_010 Hb_008749_090--Hb_149515_010 Hb_006916_190 Hb_006916_190 Hb_008749_090--Hb_006916_190 Hb_001780_130 Hb_001780_130 Hb_008749_090--Hb_001780_130 Hb_000343_100 Hb_000343_100 Hb_008749_090--Hb_000343_100 Hb_008749_090--Hb_000816_020 Hb_008145_010 Hb_008145_010 Hb_149515_010--Hb_008145_010 Hb_011909_010 Hb_011909_010 Hb_149515_010--Hb_011909_010 Hb_000649_180 Hb_000649_180 Hb_149515_010--Hb_000649_180 Hb_002291_020 Hb_002291_020 Hb_149515_010--Hb_002291_020 Hb_007919_040 Hb_007919_040 Hb_149515_010--Hb_007919_040 Hb_000141_010 Hb_000141_010 Hb_149515_010--Hb_000141_010 Hb_112203_010 Hb_112203_010 Hb_005389_190--Hb_112203_010 Hb_004143_120 Hb_004143_120 Hb_005389_190--Hb_004143_120 Hb_005389_190--Hb_000343_100 Hb_144004_010 Hb_144004_010 Hb_005389_190--Hb_144004_010 Hb_002006_140 Hb_002006_140 Hb_005389_190--Hb_002006_140 Hb_082683_010 Hb_082683_010 Hb_000816_020--Hb_082683_010 Hb_000816_020--Hb_006096_020 Hb_001677_230 Hb_001677_230 Hb_000816_020--Hb_001677_230 Hb_002420_010 Hb_002420_010 Hb_000816_020--Hb_002420_010 Hb_033594_100 Hb_033594_100 Hb_000816_020--Hb_033594_100 Hb_000811_010 Hb_000811_010 Hb_000816_020--Hb_000811_010 Hb_006096_020--Hb_001677_230 Hb_012023_010 Hb_012023_010 Hb_006096_020--Hb_012023_010 Hb_001619_010 Hb_001619_010 Hb_006096_020--Hb_001619_010 Hb_006096_020--Hb_082683_010 Hb_000059_080 Hb_000059_080 Hb_006096_020--Hb_000059_080 Hb_001004_100 Hb_001004_100 Hb_029904_010--Hb_001004_100 Hb_000453_240 Hb_000453_240 Hb_029904_010--Hb_000453_240 Hb_001123_010 Hb_001123_010 Hb_029904_010--Hb_001123_010 Hb_001776_190 Hb_001776_190 Hb_029904_010--Hb_001776_190 Hb_000061_090 Hb_000061_090 Hb_029904_010--Hb_000061_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.182436 1.08435 0.302602 0.27148 0.0658222 0.134192
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.21828 0.212192 0.852013 4.62993 2.28975

CAGE analysis