Hb_006916_190

Information

Type -
Description -
Location Contig6916: 173463-175755
Sequence    

Annotation

kegg
ID rcu:RCOM_0985450
description ubiquitin-protein ligase, putative
nr
ID XP_002528983.1
description ubiquitin-protein ligase, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SSL4
description Ubiquitin-protein ligase, putative OS=Ricinus communis GN=RCOM_0985450 PE=4 SV=1
Gene Ontology
ID GO:0044464
description c2 domain-containing family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54432: 173495-173776
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006916_190 0.0 - - ubiquitin-protein ligase, putative [Ricinus communis]
2 Hb_172939_010 0.2005024367 - - unknown [Picea sitchensis]
3 Hb_000216_030 0.2022396234 - - aldehyde oxidase, putative [Ricinus communis]
4 Hb_008749_090 0.2045521779 - - hypothetical protein CICLE_v10017161mg [Citrus clementina]
5 Hb_000816_020 0.2095310851 desease resistance Gene Name: NB-ARC unnamed protein product [Coffea canephora]
6 Hb_012788_010 0.2189019253 desease resistance Gene Name: NB-ARC Disease resistance protein RPS5, putative [Ricinus communis]
7 Hb_168386_010 0.221013933 - - Disease resistance protein RPS5, putative [Ricinus communis]
8 Hb_102011_010 0.2236665793 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
9 Hb_167977_010 0.2290065069 - - hypothetical protein POPTR_0185s002102g, partial [Populus trichocarpa]
10 Hb_001780_130 0.2301261102 - - hypothetical protein JCGZ_08545 [Jatropha curcas]
11 Hb_001123_010 0.2328266164 - - conserved hypothetical protein [Ricinus communis]
12 Hb_053125_010 0.2345023996 - - PREDICTED: uncharacterized protein LOC104881508 [Vitis vinifera]
13 Hb_096811_010 0.2386834228 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At1g61190 [Vitis vinifera]
14 Hb_003517_010 0.2438736808 - - PREDICTED: ABC transporter C family member 3-like isoform X1 [Jatropha curcas]
15 Hb_000343_100 0.2449842295 - - PREDICTED: regulator of telomere elongation helicase 1 homolog [Jatropha curcas]
16 Hb_147218_010 0.2451908633 - - Disease resistance protein RPS5, putative [Ricinus communis]
17 Hb_002026_080 0.2454061451 desease resistance Gene Name: TIR_2 nucleoside-triphosphatase, putative [Ricinus communis]
18 Hb_001086_030 0.2454672228 - - Disease resistance protein RPS5, putative [Ricinus communis]
19 Hb_041184_010 0.2483420861 desease resistance Gene Name: NB-ARC Disease resistance protein RPS5, putative [Ricinus communis]
20 Hb_001304_130 0.2511550744 transcription factor TF Family: GRAS PREDICTED: scarecrow-like transcription factor PAT1 [Jatropha curcas]

Gene co-expression network

sample Hb_006916_190 Hb_006916_190 Hb_172939_010 Hb_172939_010 Hb_006916_190--Hb_172939_010 Hb_000216_030 Hb_000216_030 Hb_006916_190--Hb_000216_030 Hb_008749_090 Hb_008749_090 Hb_006916_190--Hb_008749_090 Hb_000816_020 Hb_000816_020 Hb_006916_190--Hb_000816_020 Hb_012788_010 Hb_012788_010 Hb_006916_190--Hb_012788_010 Hb_168386_010 Hb_168386_010 Hb_006916_190--Hb_168386_010 Hb_000120_880 Hb_000120_880 Hb_172939_010--Hb_000120_880 Hb_004310_170 Hb_004310_170 Hb_172939_010--Hb_004310_170 Hb_025668_020 Hb_025668_020 Hb_172939_010--Hb_025668_020 Hb_003640_010 Hb_003640_010 Hb_172939_010--Hb_003640_010 Hb_002122_050 Hb_002122_050 Hb_172939_010--Hb_002122_050 Hb_172939_010--Hb_168386_010 Hb_044380_020 Hb_044380_020 Hb_000216_030--Hb_044380_020 Hb_001086_030 Hb_001086_030 Hb_000216_030--Hb_001086_030 Hb_003517_010 Hb_003517_010 Hb_000216_030--Hb_003517_010 Hb_000216_030--Hb_008749_090 Hb_001123_010 Hb_001123_010 Hb_000216_030--Hb_001123_010 Hb_008749_090--Hb_003517_010 Hb_149515_010 Hb_149515_010 Hb_008749_090--Hb_149515_010 Hb_001780_130 Hb_001780_130 Hb_008749_090--Hb_001780_130 Hb_000343_100 Hb_000343_100 Hb_008749_090--Hb_000343_100 Hb_008749_090--Hb_000816_020 Hb_082683_010 Hb_082683_010 Hb_000816_020--Hb_082683_010 Hb_006096_020 Hb_006096_020 Hb_000816_020--Hb_006096_020 Hb_001677_230 Hb_001677_230 Hb_000816_020--Hb_001677_230 Hb_002420_010 Hb_002420_010 Hb_000816_020--Hb_002420_010 Hb_033594_100 Hb_033594_100 Hb_000816_020--Hb_033594_100 Hb_000811_010 Hb_000811_010 Hb_000816_020--Hb_000811_010 Hb_121992_010 Hb_121992_010 Hb_012788_010--Hb_121992_010 Hb_136880_010 Hb_136880_010 Hb_012788_010--Hb_136880_010 Hb_001304_130 Hb_001304_130 Hb_012788_010--Hb_001304_130 Hb_001485_010 Hb_001485_010 Hb_012788_010--Hb_001485_010 Hb_134279_010 Hb_134279_010 Hb_012788_010--Hb_134279_010 Hb_053125_010 Hb_053125_010 Hb_012788_010--Hb_053125_010 Hb_002639_010 Hb_002639_010 Hb_168386_010--Hb_002639_010 Hb_168386_010--Hb_001304_130 Hb_009642_010 Hb_009642_010 Hb_168386_010--Hb_009642_010 Hb_121441_010 Hb_121441_010 Hb_168386_010--Hb_121441_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.246001 0.0487629 0.226699 0.0557092 0.113745
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.183903 1.08977 0.405734

CAGE analysis