Hb_001304_130

Information

Type transcription factor
Description TF Family: GRAS
Location Contig1304: 211377-213008
Sequence    

Annotation

kegg
ID pop:POPTR_0014s16230g
description POPTRDRAFT_664861; hypothetical protein
nr
ID XP_012081427.1
description PREDICTED: scarecrow-like transcription factor PAT1 [Jatropha curcas]
swissprot
ID Q9LDL7
description Scarecrow-like transcription factor PAT1 OS=Arabidopsis thaliana GN=PAT1 PE=2 SV=1
trembl
ID A0A067KCD6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18469 PE=4 SV=1
Gene Ontology
ID GO:0006351
description scarecrow-like transcription factor pat1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001304_130 0.0 transcription factor TF Family: GRAS PREDICTED: scarecrow-like transcription factor PAT1 [Jatropha curcas]
2 Hb_147218_010 0.1037799251 - - Disease resistance protein RPS5, putative [Ricinus communis]
3 Hb_121992_010 0.1131360679 - - hypothetical protein POPTR_0005s04441g [Populus trichocarpa]
4 Hb_000875_070 0.1412381223 - - -
5 Hb_086336_010 0.1486328908 - - hypothetical protein CISIN_1g022501mg [Citrus sinensis]
6 Hb_003216_070 0.1579565939 - - hypothetical protein RCOM_0483300 [Ricinus communis]
7 Hb_001486_060 0.1654025577 - - PREDICTED: uncharacterized protein LOC105632622 [Jatropha curcas]
8 Hb_168180_010 0.1691263332 - - conserved hypothetical protein [Ricinus communis]
9 Hb_012788_010 0.1691767509 desease resistance Gene Name: NB-ARC Disease resistance protein RPS5, putative [Ricinus communis]
10 Hb_011032_010 0.1733936091 - - PREDICTED: putative disease resistance protein RGA4 [Jatropha curcas]
11 Hb_136880_010 0.1737855134 desease resistance Gene Name: NB-ARC Disease resistance protein RPS5, putative [Ricinus communis]
12 Hb_065500_010 0.1826192539 - - -
13 Hb_002518_180 0.1868496648 - - hypothetical protein POPTR_0001s25460g [Populus trichocarpa]
14 Hb_039074_010 0.190043617 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
15 Hb_053575_020 0.197307909 - - PREDICTED: RNA-binding protein 39 [Jatropha curcas]
16 Hb_000979_160 0.197989587 - - hypothetical protein RCOM_0629030 [Ricinus communis]
17 Hb_009535_030 0.1991868928 - - CP2 [Hevea brasiliensis]
18 Hb_005217_040 0.1994018781 - - PREDICTED: F-box protein PP2-A12 isoform X1 [Jatropha curcas]
19 Hb_000818_080 0.2009147416 - - PREDICTED: monosaccharide-sensing protein 2 [Jatropha curcas]
20 Hb_000019_010 0.2038575076 - - PREDICTED: long chain base biosynthesis protein 2a [Jatropha curcas]

Gene co-expression network

sample Hb_001304_130 Hb_001304_130 Hb_147218_010 Hb_147218_010 Hb_001304_130--Hb_147218_010 Hb_121992_010 Hb_121992_010 Hb_001304_130--Hb_121992_010 Hb_000875_070 Hb_000875_070 Hb_001304_130--Hb_000875_070 Hb_086336_010 Hb_086336_010 Hb_001304_130--Hb_086336_010 Hb_003216_070 Hb_003216_070 Hb_001304_130--Hb_003216_070 Hb_001486_060 Hb_001486_060 Hb_001304_130--Hb_001486_060 Hb_147218_010--Hb_086336_010 Hb_011032_010 Hb_011032_010 Hb_147218_010--Hb_011032_010 Hb_147218_010--Hb_000875_070 Hb_147218_010--Hb_121992_010 Hb_147218_010--Hb_001486_060 Hb_136880_010 Hb_136880_010 Hb_121992_010--Hb_136880_010 Hb_012788_010 Hb_012788_010 Hb_121992_010--Hb_012788_010 Hb_121992_010--Hb_086336_010 Hb_001485_010 Hb_001485_010 Hb_121992_010--Hb_001485_010 Hb_002518_180 Hb_002518_180 Hb_000875_070--Hb_002518_180 Hb_000019_010 Hb_000019_010 Hb_000875_070--Hb_000019_010 Hb_044380_020 Hb_044380_020 Hb_000875_070--Hb_044380_020 Hb_005217_040 Hb_005217_040 Hb_000875_070--Hb_005217_040 Hb_086336_010--Hb_001486_060 Hb_003371_190 Hb_003371_190 Hb_086336_010--Hb_003371_190 Hb_000818_080 Hb_000818_080 Hb_086336_010--Hb_000818_080 Hb_005288_210 Hb_005288_210 Hb_086336_010--Hb_005288_210 Hb_000979_160 Hb_000979_160 Hb_003216_070--Hb_000979_160 Hb_001252_190 Hb_001252_190 Hb_003216_070--Hb_001252_190 Hb_003216_070--Hb_147218_010 Hb_003216_070--Hb_001486_060 Hb_005054_170 Hb_005054_170 Hb_003216_070--Hb_005054_170 Hb_001486_060--Hb_000818_080 Hb_000793_040 Hb_000793_040 Hb_001486_060--Hb_000793_040 Hb_002026_080 Hb_002026_080 Hb_001486_060--Hb_002026_080 Hb_000483_130 Hb_000483_130 Hb_001486_060--Hb_000483_130 Hb_004657_080 Hb_004657_080 Hb_001486_060--Hb_004657_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.871914 6.16437 0.740619 8.85946 0.684439 2.96197
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.22685 0.200786 2.01811 10.5499 9.27223

CAGE analysis