Hb_005054_170

Information

Type transcription factor
Description TF Family: MYB
Location Contig5054: 114388-115657
Sequence    

Annotation

kegg
ID rcu:RCOM_0498800
description DNA binding protein, putative
nr
ID XP_002530418.1
description DNA binding protein, putative [Ricinus communis]
swissprot
ID Q8S9H7
description Transcription factor DIVARICATA OS=Antirrhinum majus GN=DIVARICATA PE=2 SV=1
trembl
ID B9SWP9
description DNA binding protein, putative OS=Ricinus communis GN=RCOM_0498800 PE=4 SV=1
Gene Ontology
ID GO:0005634
description transcription factor divaricata-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46067: 114854-115754
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005054_170 0.0 transcription factor TF Family: MYB DNA binding protein, putative [Ricinus communis]
2 Hb_000062_640 0.1320307918 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF2.2-like isoform X2 [Populus euphratica]
3 Hb_000028_340 0.1457532799 - - PREDICTED: potassium channel SKOR-like [Prunus mume]
4 Hb_002027_170 0.1526410155 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase RKF3 [Jatropha curcas]
5 Hb_062479_010 0.1588082546 - - hypothetical protein PHAVU_008G071200g [Phaseolus vulgaris]
6 Hb_000056_280 0.1603348567 - - sur2 hydroxylase/desaturase, putative [Ricinus communis]
7 Hb_000025_400 0.1635326626 - - PREDICTED: uncharacterized protein LOC105110770 [Populus euphratica]
8 Hb_001446_060 0.1675676552 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
9 Hb_000207_290 0.1680890051 - - hypothetical protein JCGZ_03920 [Jatropha curcas]
10 Hb_000979_160 0.1720542228 - - hypothetical protein RCOM_0629030 [Ricinus communis]
11 Hb_007027_010 0.1749501345 - - RING-H2 finger protein ATL2J, putative [Ricinus communis]
12 Hb_008468_030 0.1780813105 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance RPP13-like protein 4 [Jatropha curcas]
13 Hb_000836_600 0.1833955554 - - PREDICTED: delta(8)-fatty-acid desaturase 2 [Jatropha curcas]
14 Hb_036568_010 0.1836991794 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 23 [Jatropha curcas]
15 Hb_000540_040 0.1858838828 - - PREDICTED: chitinase 2 [Amborella trichopoda]
16 Hb_001898_020 0.1885070049 - - PREDICTED: uncharacterized protein LOC105629659 [Jatropha curcas]
17 Hb_005016_020 0.1894468518 desease resistance Gene Name: ABC_membrane ABC transporter family protein [Hevea brasiliensis]
18 Hb_001049_160 0.1939130545 - - aldose 1-epimerase, putative [Ricinus communis]
19 Hb_003216_070 0.1947672151 - - hypothetical protein RCOM_0483300 [Ricinus communis]
20 Hb_000805_190 0.1952246625 transcription factor TF Family: GRAS PREDICTED: uncharacterized protein LOC103323607 [Prunus mume]

Gene co-expression network

sample Hb_005054_170 Hb_005054_170 Hb_000062_640 Hb_000062_640 Hb_005054_170--Hb_000062_640 Hb_000028_340 Hb_000028_340 Hb_005054_170--Hb_000028_340 Hb_002027_170 Hb_002027_170 Hb_005054_170--Hb_002027_170 Hb_062479_010 Hb_062479_010 Hb_005054_170--Hb_062479_010 Hb_000056_280 Hb_000056_280 Hb_005054_170--Hb_000056_280 Hb_000025_400 Hb_000025_400 Hb_005054_170--Hb_000025_400 Hb_000062_640--Hb_000028_340 Hb_003470_050 Hb_003470_050 Hb_000062_640--Hb_003470_050 Hb_001446_060 Hb_001446_060 Hb_000062_640--Hb_001446_060 Hb_002289_150 Hb_002289_150 Hb_000062_640--Hb_002289_150 Hb_005489_150 Hb_005489_150 Hb_000062_640--Hb_005489_150 Hb_000028_340--Hb_000056_280 Hb_000028_340--Hb_003470_050 Hb_000649_120 Hb_000649_120 Hb_000028_340--Hb_000649_120 Hb_006469_070 Hb_006469_070 Hb_000028_340--Hb_006469_070 Hb_008468_030 Hb_008468_030 Hb_000028_340--Hb_008468_030 Hb_001049_160 Hb_001049_160 Hb_002027_170--Hb_001049_160 Hb_002027_170--Hb_000056_280 Hb_001318_140 Hb_001318_140 Hb_002027_170--Hb_001318_140 Hb_065525_010 Hb_065525_010 Hb_002027_170--Hb_065525_010 Hb_000836_600 Hb_000836_600 Hb_002027_170--Hb_000836_600 Hb_001401_070 Hb_001401_070 Hb_062479_010--Hb_001401_070 Hb_064047_010 Hb_064047_010 Hb_062479_010--Hb_064047_010 Hb_003371_260 Hb_003371_260 Hb_062479_010--Hb_003371_260 Hb_002571_010 Hb_002571_010 Hb_062479_010--Hb_002571_010 Hb_010381_110 Hb_010381_110 Hb_062479_010--Hb_010381_110 Hb_001879_050 Hb_001879_050 Hb_062479_010--Hb_001879_050 Hb_000805_190 Hb_000805_190 Hb_000056_280--Hb_000805_190 Hb_000465_260 Hb_000465_260 Hb_000056_280--Hb_000465_260 Hb_000072_020 Hb_000072_020 Hb_000056_280--Hb_000072_020 Hb_002151_100 Hb_002151_100 Hb_000056_280--Hb_002151_100 Hb_009646_010 Hb_009646_010 Hb_000056_280--Hb_009646_010 Hb_033363_010 Hb_033363_010 Hb_000056_280--Hb_033363_010 Hb_000025_400--Hb_000465_260 Hb_000025_400--Hb_008468_030 Hb_000025_400--Hb_000056_280 Hb_002928_120 Hb_002928_120 Hb_000025_400--Hb_002928_120 Hb_005016_020 Hb_005016_020 Hb_000025_400--Hb_005016_020 Hb_004631_110 Hb_004631_110 Hb_000025_400--Hb_004631_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.66755 20.8469 2.09614 20.0228 0.580835 2.51888
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.434958 0.988304 4.41867 8.93439 9.12259

CAGE analysis