Hb_003470_050

Information

Type -
Description -
Location Contig3470: 43511-52896
Sequence    

Annotation

kegg
ID rcu:RCOM_0342890
description Protein kinase APK1B, chloroplast precursor, putative
nr
ID XP_002523402.1
description Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
swissprot
ID Q9FM85
description Probable receptor-like protein kinase At5g56460 OS=Arabidopsis thaliana GN=At5g56460 PE=2 SV=1
trembl
ID B9SBN3
description Protein kinase APK1B, chloroplast, putative OS=Ricinus communis GN=RCOM_0342890 PE=3 SV=1
Gene Ontology
ID GO:0009506
description probable receptor-like protein kinase at5g56460

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36265: 44541-44663 , PASA_asmbl_36266: 50073-52886
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003470_050 0.0 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
2 Hb_000649_120 0.1217351011 - - ankyrin repeat-containing protein, putative [Ricinus communis]
3 Hb_002603_040 0.1251540857 - - PREDICTED: phosphoinositide phospholipase C 2-like [Jatropha curcas]
4 Hb_000028_340 0.1313903111 - - PREDICTED: potassium channel SKOR-like [Prunus mume]
5 Hb_000479_110 0.1354263401 - - PREDICTED: BAG family molecular chaperone regulator 8, chloroplastic [Jatropha curcas]
6 Hb_000062_640 0.1459705359 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF2.2-like isoform X2 [Populus euphratica]
7 Hb_000220_080 0.1487256988 - - kinase, putative [Ricinus communis]
8 Hb_000152_710 0.1527614347 - - PREDICTED: putative glycerol-3-phosphate transporter 1 [Jatropha curcas]
9 Hb_000111_370 0.15324916 - - PREDICTED: cation/H(+) antiporter 2-like [Jatropha curcas]
10 Hb_005016_020 0.1553343036 desease resistance Gene Name: ABC_membrane ABC transporter family protein [Hevea brasiliensis]
11 Hb_000599_360 0.1554941183 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
12 Hb_010381_020 0.1562963873 - - Endosomal P24A protein precursor, putative [Ricinus communis]
13 Hb_001009_150 0.1563690314 - - Glyceraldehyde-3-phosphate dehydrogenase [Gossypium arboreum]
14 Hb_028077_020 0.1566303787 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000735_140 0.1579765509 - - 3-glucanase family protein [Populus trichocarpa]
16 Hb_000072_020 0.1581488482 - - PREDICTED: C2 and GRAM domain-containing protein At1g03370 isoform X2 [Jatropha curcas]
17 Hb_000494_030 0.1594178462 - - PREDICTED: uncharacterized protein LOC105643196 [Jatropha curcas]
18 Hb_000062_530 0.159631631 - - PREDICTED: GDP-mannose transporter GONST3-like [Populus euphratica]
19 Hb_004680_010 0.1598838864 - - PREDICTED: uncharacterized protein LOC105636246 isoform X1 [Jatropha curcas]
20 Hb_016734_010 0.1609468929 - - PREDICTED: probable DNA-3-methyladenine glycosylase 2 [Jatropha curcas]

Gene co-expression network

sample Hb_003470_050 Hb_003470_050 Hb_000649_120 Hb_000649_120 Hb_003470_050--Hb_000649_120 Hb_002603_040 Hb_002603_040 Hb_003470_050--Hb_002603_040 Hb_000028_340 Hb_000028_340 Hb_003470_050--Hb_000028_340 Hb_000479_110 Hb_000479_110 Hb_003470_050--Hb_000479_110 Hb_000062_640 Hb_000062_640 Hb_003470_050--Hb_000062_640 Hb_000220_080 Hb_000220_080 Hb_003470_050--Hb_000220_080 Hb_002235_310 Hb_002235_310 Hb_000649_120--Hb_002235_310 Hb_000072_020 Hb_000072_020 Hb_000649_120--Hb_000072_020 Hb_000866_110 Hb_000866_110 Hb_000649_120--Hb_000866_110 Hb_000205_250 Hb_000205_250 Hb_000649_120--Hb_000205_250 Hb_000080_110 Hb_000080_110 Hb_000649_120--Hb_000080_110 Hb_000000_120 Hb_000000_120 Hb_000649_120--Hb_000000_120 Hb_000265_140 Hb_000265_140 Hb_002603_040--Hb_000265_140 Hb_000599_360 Hb_000599_360 Hb_002603_040--Hb_000599_360 Hb_002400_060 Hb_002400_060 Hb_002603_040--Hb_002400_060 Hb_000085_260 Hb_000085_260 Hb_002603_040--Hb_000085_260 Hb_001754_020 Hb_001754_020 Hb_002603_040--Hb_001754_020 Hb_000494_030 Hb_000494_030 Hb_002603_040--Hb_000494_030 Hb_000028_340--Hb_000062_640 Hb_000056_280 Hb_000056_280 Hb_000028_340--Hb_000056_280 Hb_000028_340--Hb_000649_120 Hb_006469_070 Hb_006469_070 Hb_000028_340--Hb_006469_070 Hb_008468_030 Hb_008468_030 Hb_000028_340--Hb_008468_030 Hb_000479_110--Hb_000599_360 Hb_005741_040 Hb_005741_040 Hb_000479_110--Hb_005741_040 Hb_000705_180 Hb_000705_180 Hb_000479_110--Hb_000705_180 Hb_000111_370 Hb_000111_370 Hb_000479_110--Hb_000111_370 Hb_000205_280 Hb_000205_280 Hb_000479_110--Hb_000205_280 Hb_000479_110--Hb_002603_040 Hb_005054_170 Hb_005054_170 Hb_000062_640--Hb_005054_170 Hb_001446_060 Hb_001446_060 Hb_000062_640--Hb_001446_060 Hb_002289_150 Hb_002289_150 Hb_000062_640--Hb_002289_150 Hb_005489_150 Hb_005489_150 Hb_000062_640--Hb_005489_150 Hb_000220_080--Hb_000000_120 Hb_002316_170 Hb_002316_170 Hb_000220_080--Hb_002316_170 Hb_000220_080--Hb_000072_020 Hb_001009_150 Hb_001009_150 Hb_000220_080--Hb_001009_150 Hb_000000_110 Hb_000000_110 Hb_000220_080--Hb_000000_110 Hb_006949_060 Hb_006949_060 Hb_000220_080--Hb_006949_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.13852 9.38566 5.69171 14.8342 2.36102 1.44988
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.26221 0.236437 5.3373 8.88623 6.48865

CAGE analysis