Hb_005489_150

Information

Type -
Description -
Location Contig5489: 118913-120220
Sequence    

Annotation

kegg
ID rcu:RCOM_1679980
description UDP-glucuronate 5-epimerase, putative (EC:5.1.3.12)
nr
ID KDP25603.1
description hypothetical protein JCGZ_20759 [Jatropha curcas]
swissprot
ID O81312
description UDP-glucuronate 4-epimerase 3 OS=Arabidopsis thaliana GN=GAE3 PE=2 SV=1
trembl
ID A0A067JRY4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20759 PE=4 SV=1
Gene Ontology
ID GO:0005768
description udp-glucuronate 4-epimerase 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48175: 120086-120262
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005489_150 0.0 - - hypothetical protein JCGZ_20759 [Jatropha curcas]
2 Hb_005539_140 0.1161032688 - - PREDICTED: U-box domain-containing protein 19-like [Jatropha curcas]
3 Hb_011360_110 0.1164520919 - - PREDICTED: UDP-glucose 6-dehydrogenase 1 [Vitis vinifera]
4 Hb_002289_150 0.1293201351 - - PREDICTED: cellulose synthase A catalytic subunit 3 [UDP-forming]-like [Jatropha curcas]
5 Hb_028639_030 0.1417350429 - - PREDICTED: transmembrane 9 superfamily member 2-like [Jatropha curcas]
6 Hb_000320_350 0.1422839934 - - hypothetical protein RCOM_0904330 [Ricinus communis]
7 Hb_000300_230 0.144855476 - - PREDICTED: cation/calcium exchanger 2 [Jatropha curcas]
8 Hb_001474_020 0.1470246094 - - PREDICTED: uncharacterized protein LOC105650917 [Jatropha curcas]
9 Hb_004449_250 0.1522711683 - - PREDICTED: protein EI24 homolog [Jatropha curcas]
10 Hb_001195_090 0.1533096571 - - PREDICTED: isoflavone reductase-like protein [Jatropha curcas]
11 Hb_031089_050 0.1551817893 - - kinase, putative [Ricinus communis]
12 Hb_000797_060 0.1572354977 - - PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]
13 Hb_003001_130 0.157962904 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000109_190 0.1608652995 - - PREDICTED: RING-H2 finger protein ATL47 [Jatropha curcas]
15 Hb_000138_060 0.1623557682 - - PREDICTED: protein trichome birefringence [Jatropha curcas]
16 Hb_002639_020 0.1628967726 - - PREDICTED: probable alpha-amylase 2 [Jatropha curcas]
17 Hb_020805_120 0.1637208148 - - PREDICTED: glutamate receptor 3.3 [Jatropha curcas]
18 Hb_000455_070 0.1650793666 - - PREDICTED: LOW QUALITY PROTEIN: carboxymethylenebutenolidase homolog [Jatropha curcas]
19 Hb_000603_020 0.1667309926 - - PREDICTED: uncharacterized protein LOC105638063 isoform X1 [Jatropha curcas]
20 Hb_009674_010 0.1667382319 - - AAEL007687-PA [Aedes aegypti]

Gene co-expression network

sample Hb_005489_150 Hb_005489_150 Hb_005539_140 Hb_005539_140 Hb_005489_150--Hb_005539_140 Hb_011360_110 Hb_011360_110 Hb_005489_150--Hb_011360_110 Hb_002289_150 Hb_002289_150 Hb_005489_150--Hb_002289_150 Hb_028639_030 Hb_028639_030 Hb_005489_150--Hb_028639_030 Hb_000320_350 Hb_000320_350 Hb_005489_150--Hb_000320_350 Hb_000300_230 Hb_000300_230 Hb_005489_150--Hb_000300_230 Hb_000479_060 Hb_000479_060 Hb_005539_140--Hb_000479_060 Hb_030565_050 Hb_030565_050 Hb_005539_140--Hb_030565_050 Hb_000455_070 Hb_000455_070 Hb_005539_140--Hb_000455_070 Hb_000030_130 Hb_000030_130 Hb_005539_140--Hb_000030_130 Hb_000109_190 Hb_000109_190 Hb_005539_140--Hb_000109_190 Hb_001474_020 Hb_001474_020 Hb_011360_110--Hb_001474_020 Hb_011360_110--Hb_028639_030 Hb_132840_160 Hb_132840_160 Hb_011360_110--Hb_132840_160 Hb_004449_250 Hb_004449_250 Hb_011360_110--Hb_004449_250 Hb_011360_110--Hb_000320_350 Hb_000138_060 Hb_000138_060 Hb_002289_150--Hb_000138_060 Hb_001754_060 Hb_001754_060 Hb_002289_150--Hb_001754_060 Hb_002289_150--Hb_000300_230 Hb_000797_060 Hb_000797_060 Hb_002289_150--Hb_000797_060 Hb_011828_010 Hb_011828_010 Hb_002289_150--Hb_011828_010 Hb_026740_020 Hb_026740_020 Hb_002289_150--Hb_026740_020 Hb_001216_110 Hb_001216_110 Hb_028639_030--Hb_001216_110 Hb_000570_020 Hb_000570_020 Hb_028639_030--Hb_000570_020 Hb_021576_070 Hb_021576_070 Hb_028639_030--Hb_021576_070 Hb_000679_040 Hb_000679_040 Hb_028639_030--Hb_000679_040 Hb_001195_090 Hb_001195_090 Hb_028639_030--Hb_001195_090 Hb_000603_020 Hb_000603_020 Hb_000320_350--Hb_000603_020 Hb_000320_350--Hb_004449_250 Hb_003001_130 Hb_003001_130 Hb_000320_350--Hb_003001_130 Hb_000320_350--Hb_028639_030 Hb_000928_120 Hb_000928_120 Hb_000320_350--Hb_000928_120 Hb_000300_230--Hb_000797_060 Hb_000300_230--Hb_001754_060 Hb_004449_090 Hb_004449_090 Hb_000300_230--Hb_004449_090 Hb_000300_230--Hb_000138_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.40664 12.7046 4.22356 31.3522 1.50289 2.55785
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.83132 2.59313 4.84409 4.1719 16.0535

CAGE analysis