Hb_004449_250

Information

Type -
Description -
Location Contig4449: 167752-173136
Sequence    

Annotation

kegg
ID pop:POPTR_0004s23100g
description hypothetical protein
nr
ID XP_012066640.1
description PREDICTED: protein EI24 homolog [Jatropha curcas]
swissprot
ID Q5BPL5
description Protein EI24 homolog OS=Arabidopsis thaliana GN=At4g06676 PE=2 SV=1
trembl
ID B9N0B7
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s23100g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004449_250 0.0 - - PREDICTED: protein EI24 homolog [Jatropha curcas]
2 Hb_000320_350 0.1194832469 - - hypothetical protein RCOM_0904330 [Ricinus communis]
3 Hb_011360_110 0.1196386926 - - PREDICTED: UDP-glucose 6-dehydrogenase 1 [Vitis vinifera]
4 Hb_012707_040 0.1246390698 - - PREDICTED: probable inactive purple acid phosphatase 29 [Jatropha curcas]
5 Hb_003006_080 0.1350757348 - - PREDICTED: heparan-alpha-glucosaminide N-acetyltransferase-like isoform X1 [Jatropha curcas]
6 Hb_000258_050 0.1374733277 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription repressor VAL2 isoform X2 [Jatropha curcas]
7 Hb_007537_030 0.1393523547 - - PREDICTED: gamma aminobutyrate transaminase 3, chloroplastic [Jatropha curcas]
8 Hb_000684_310 0.1398863879 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g67720 [Jatropha curcas]
9 Hb_019654_110 0.1408566987 - - PREDICTED: F-box protein SKIP23-like [Jatropha curcas]
10 Hb_001474_020 0.1477238322 - - PREDICTED: uncharacterized protein LOC105650917 [Jatropha curcas]
11 Hb_003470_110 0.1479258932 - - unnamed protein product [Vitis vinifera]
12 Hb_003462_080 0.1502418079 - - Protein kinase APK1A, chloroplast precursor, putative [Ricinus communis]
13 Hb_003001_130 0.1507385488 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000416_060 0.1514489876 - - PREDICTED: uncharacterized protein LOC105649718 [Jatropha curcas]
15 Hb_005489_150 0.1522711683 - - hypothetical protein JCGZ_20759 [Jatropha curcas]
16 Hb_000157_140 0.1535058895 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
17 Hb_000928_120 0.1554548176 - - PREDICTED: benzyl alcohol O-benzoyltransferase-like [Jatropha curcas]
18 Hb_098795_030 0.1556792824 - - PREDICTED: metal tolerance protein 1-like [Vitis vinifera]
19 Hb_000570_020 0.1588680245 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX9H isoform X1 [Jatropha curcas]
20 Hb_006469_070 0.1589806366 - - PREDICTED: F-box/kelch-repeat protein At1g22040 [Jatropha curcas]

Gene co-expression network

sample Hb_004449_250 Hb_004449_250 Hb_000320_350 Hb_000320_350 Hb_004449_250--Hb_000320_350 Hb_011360_110 Hb_011360_110 Hb_004449_250--Hb_011360_110 Hb_012707_040 Hb_012707_040 Hb_004449_250--Hb_012707_040 Hb_003006_080 Hb_003006_080 Hb_004449_250--Hb_003006_080 Hb_000258_050 Hb_000258_050 Hb_004449_250--Hb_000258_050 Hb_007537_030 Hb_007537_030 Hb_004449_250--Hb_007537_030 Hb_000603_020 Hb_000603_020 Hb_000320_350--Hb_000603_020 Hb_000320_350--Hb_011360_110 Hb_003001_130 Hb_003001_130 Hb_000320_350--Hb_003001_130 Hb_028639_030 Hb_028639_030 Hb_000320_350--Hb_028639_030 Hb_000928_120 Hb_000928_120 Hb_000320_350--Hb_000928_120 Hb_001474_020 Hb_001474_020 Hb_011360_110--Hb_001474_020 Hb_011360_110--Hb_028639_030 Hb_132840_160 Hb_132840_160 Hb_011360_110--Hb_132840_160 Hb_005489_150 Hb_005489_150 Hb_011360_110--Hb_005489_150 Hb_010042_020 Hb_010042_020 Hb_012707_040--Hb_010042_020 Hb_001486_040 Hb_001486_040 Hb_012707_040--Hb_001486_040 Hb_012707_040--Hb_007537_030 Hb_012707_040--Hb_011360_110 Hb_010390_010 Hb_010390_010 Hb_012707_040--Hb_010390_010 Hb_030312_030 Hb_030312_030 Hb_003006_080--Hb_030312_030 Hb_005116_140 Hb_005116_140 Hb_003006_080--Hb_005116_140 Hb_002805_090 Hb_002805_090 Hb_003006_080--Hb_002805_090 Hb_000473_120 Hb_000473_120 Hb_003006_080--Hb_000473_120 Hb_019654_110 Hb_019654_110 Hb_003006_080--Hb_019654_110 Hb_010381_020 Hb_010381_020 Hb_003006_080--Hb_010381_020 Hb_005016_010 Hb_005016_010 Hb_000258_050--Hb_005016_010 Hb_001473_170 Hb_001473_170 Hb_000258_050--Hb_001473_170 Hb_001951_060 Hb_001951_060 Hb_000258_050--Hb_001951_060 Hb_007313_040 Hb_007313_040 Hb_000258_050--Hb_007313_040 Hb_000258_050--Hb_007537_030 Hb_034083_020 Hb_034083_020 Hb_000258_050--Hb_034083_020 Hb_000570_020 Hb_000570_020 Hb_007537_030--Hb_000570_020 Hb_000157_140 Hb_000157_140 Hb_007537_030--Hb_000157_140 Hb_004030_060 Hb_004030_060 Hb_007537_030--Hb_004030_060 Hb_018845_010 Hb_018845_010 Hb_007537_030--Hb_018845_010 Hb_021576_070 Hb_021576_070 Hb_007537_030--Hb_021576_070 Hb_004326_010 Hb_004326_010 Hb_007537_030--Hb_004326_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0779708 0.701193 0.372494 1.87641 0.057361 0.235512
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.22285 0.385632 0.129884 0.576672 1.15553

CAGE analysis