Hb_028639_030

Information

Type -
Description -
Location Contig28639: 38452-49905
Sequence    

Annotation

kegg
ID tcc:TCM_011187
description Endomembrane protein 70 protein family isoform 1
nr
ID XP_012072398.1
description PREDICTED: transmembrane 9 superfamily member 2-like [Jatropha curcas]
swissprot
ID Q940S0
description Transmembrane 9 superfamily member 2 OS=Arabidopsis thaliana GN=TMN2 PE=2 SV=1
trembl
ID A0A067KPY8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04835 PE=4 SV=1
Gene Ontology
ID GO:0000139
description phagocytic receptor 1b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29892: 38650-49926
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_028639_030 0.0 - - PREDICTED: transmembrane 9 superfamily member 2-like [Jatropha curcas]
2 Hb_001216_110 0.0731933272 - - PREDICTED: protein GPR107-like [Jatropha curcas]
3 Hb_000570_020 0.0923242431 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX9H isoform X1 [Jatropha curcas]
4 Hb_021576_070 0.0968154919 - - hypothetical protein PRUPE_ppa002736mg [Prunus persica]
5 Hb_011360_110 0.1014260254 - - PREDICTED: UDP-glucose 6-dehydrogenase 1 [Vitis vinifera]
6 Hb_000679_040 0.104508146 - - Cellulose synthase 1 [Theobroma cacao]
7 Hb_001195_090 0.1073529468 - - PREDICTED: isoflavone reductase-like protein [Jatropha curcas]
8 Hb_001969_140 0.109843788 - - PREDICTED: uncharacterized protein LOC105634929 [Jatropha curcas]
9 Hb_001195_310 0.1099524845 - - ATP binding protein, putative [Ricinus communis]
10 Hb_004109_050 0.1102414832 - - PREDICTED: putative callose synthase 8 [Jatropha curcas]
11 Hb_000283_140 0.1106836124 - - PREDICTED: transcriptional corepressor LEUNIG-like isoform X1 [Jatropha curcas]
12 Hb_002129_020 0.1126109546 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX14 [Jatropha curcas]
13 Hb_001105_130 0.1139759431 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase RPK2 [Jatropha curcas]
14 Hb_000152_710 0.1141429074 - - PREDICTED: putative glycerol-3-phosphate transporter 1 [Jatropha curcas]
15 Hb_000684_310 0.1142294247 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g67720 [Jatropha curcas]
16 Hb_006351_020 0.1163112304 - - PREDICTED: L-type lectin-domain containing receptor kinase S.4-like [Jatropha curcas]
17 Hb_007537_030 0.1163947904 - - PREDICTED: gamma aminobutyrate transaminase 3, chloroplastic [Jatropha curcas]
18 Hb_000638_060 0.1169130906 - - PREDICTED: probable methyltransferase PMT26 [Jatropha curcas]
19 Hb_004326_010 0.1191647338 - - cationic amino acid transporter, putative [Ricinus communis]
20 Hb_001754_020 0.1196473723 - - PREDICTED: kinesin-13A isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_028639_030 Hb_028639_030 Hb_001216_110 Hb_001216_110 Hb_028639_030--Hb_001216_110 Hb_000570_020 Hb_000570_020 Hb_028639_030--Hb_000570_020 Hb_021576_070 Hb_021576_070 Hb_028639_030--Hb_021576_070 Hb_011360_110 Hb_011360_110 Hb_028639_030--Hb_011360_110 Hb_000679_040 Hb_000679_040 Hb_028639_030--Hb_000679_040 Hb_001195_090 Hb_001195_090 Hb_028639_030--Hb_001195_090 Hb_001216_110--Hb_000679_040 Hb_001216_110--Hb_021576_070 Hb_001969_140 Hb_001969_140 Hb_001216_110--Hb_001969_140 Hb_002129_020 Hb_002129_020 Hb_001216_110--Hb_002129_020 Hb_001195_310 Hb_001195_310 Hb_001216_110--Hb_001195_310 Hb_004943_040 Hb_004943_040 Hb_000570_020--Hb_004943_040 Hb_116349_120 Hb_116349_120 Hb_000570_020--Hb_116349_120 Hb_007537_030 Hb_007537_030 Hb_000570_020--Hb_007537_030 Hb_000375_300 Hb_000375_300 Hb_000570_020--Hb_000375_300 Hb_000283_140 Hb_000283_140 Hb_000570_020--Hb_000283_140 Hb_000152_710 Hb_000152_710 Hb_021576_070--Hb_000152_710 Hb_004109_050 Hb_004109_050 Hb_021576_070--Hb_004109_050 Hb_000701_030 Hb_000701_030 Hb_021576_070--Hb_000701_030 Hb_000418_020 Hb_000418_020 Hb_021576_070--Hb_000418_020 Hb_001754_020 Hb_001754_020 Hb_021576_070--Hb_001754_020 Hb_001474_020 Hb_001474_020 Hb_011360_110--Hb_001474_020 Hb_132840_160 Hb_132840_160 Hb_011360_110--Hb_132840_160 Hb_005489_150 Hb_005489_150 Hb_011360_110--Hb_005489_150 Hb_004449_250 Hb_004449_250 Hb_011360_110--Hb_004449_250 Hb_000320_350 Hb_000320_350 Hb_011360_110--Hb_000320_350 Hb_011310_050 Hb_011310_050 Hb_000679_040--Hb_011310_050 Hb_000679_040--Hb_001195_310 Hb_000679_040--Hb_001969_140 Hb_000254_070 Hb_000254_070 Hb_000679_040--Hb_000254_070 Hb_000679_040--Hb_021576_070 Hb_001195_090--Hb_002129_020 Hb_001195_090--Hb_001216_110 Hb_002596_080 Hb_002596_080 Hb_001195_090--Hb_002596_080 Hb_000684_310 Hb_000684_310 Hb_001195_090--Hb_000684_310 Hb_001493_060 Hb_001493_060 Hb_001195_090--Hb_001493_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.43827 16.3505 19.9234 64.8117 5.2744 6.17573
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.62433 5.96234 11.6337 15.784 35.8082

CAGE analysis