Hb_000679_040

Information

Type -
Description -
Location Contig679: 43674-52305
Sequence    

Annotation

kegg
ID tcc:TCM_038394
description Cellulose synthase 1
nr
ID XP_007013842.1
description Cellulose synthase 1 [Theobroma cacao]
swissprot
ID Q6AT26
description Probable cellulose synthase A catalytic subunit 1 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA1 PE=2 SV=1
trembl
ID A0A061GPK5
description Cellulose synthase OS=Theobroma cacao GN=TCM_038394 PE=3 SV=1
Gene Ontology
ID GO:0005886
description cellulose synthase a catalytic subunit 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53671: 49420-52579
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000679_040 0.0 - - Cellulose synthase 1 [Theobroma cacao]
2 Hb_001216_110 0.058185863 - - PREDICTED: protein GPR107-like [Jatropha curcas]
3 Hb_011310_050 0.0688201416 - - PREDICTED: cellulose synthase A catalytic subunit 1 [UDP-forming] [Jatropha curcas]
4 Hb_001195_310 0.0730456457 - - ATP binding protein, putative [Ricinus communis]
5 Hb_001969_140 0.0855708728 - - PREDICTED: uncharacterized protein LOC105634929 [Jatropha curcas]
6 Hb_000254_070 0.0861364477 - - PREDICTED: protein disulfide isomerase-like 1-6 [Jatropha curcas]
7 Hb_021576_070 0.0885726911 - - hypothetical protein PRUPE_ppa002736mg [Prunus persica]
8 Hb_000167_040 0.0887600274 - - PREDICTED: serine carboxypeptidase-like [Jatropha curcas]
9 Hb_000003_310 0.095774508 - - PREDICTED: glycosyltransferase-like KOBITO 1 [Jatropha curcas]
10 Hb_028639_030 0.104508146 - - PREDICTED: transmembrane 9 superfamily member 2-like [Jatropha curcas]
11 Hb_000152_710 0.1065790365 - - PREDICTED: putative glycerol-3-phosphate transporter 1 [Jatropha curcas]
12 Hb_001105_130 0.1072184301 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase RPK2 [Jatropha curcas]
13 Hb_059741_010 0.1078966524 - - PREDICTED: cellulose synthase A catalytic subunit 1 [UDP-forming] [Jatropha curcas]
14 Hb_000684_310 0.10839585 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g67720 [Jatropha curcas]
15 Hb_003371_190 0.1090074733 - - PREDICTED: beta-glucosidase 13-like [Jatropha curcas]
16 Hb_020586_010 0.1141172188 - - Alpha-N-arabinofuranosidase 1 precursor, putative [Ricinus communis]
17 Hb_000494_030 0.1171122025 - - PREDICTED: uncharacterized protein LOC105643196 [Jatropha curcas]
18 Hb_009674_010 0.1186082182 - - AAEL007687-PA [Aedes aegypti]
19 Hb_010381_020 0.1204645918 - - Endosomal P24A protein precursor, putative [Ricinus communis]
20 Hb_007317_020 0.1206133537 - - PREDICTED: transmembrane 9 superfamily member 5 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000679_040 Hb_000679_040 Hb_001216_110 Hb_001216_110 Hb_000679_040--Hb_001216_110 Hb_011310_050 Hb_011310_050 Hb_000679_040--Hb_011310_050 Hb_001195_310 Hb_001195_310 Hb_000679_040--Hb_001195_310 Hb_001969_140 Hb_001969_140 Hb_000679_040--Hb_001969_140 Hb_000254_070 Hb_000254_070 Hb_000679_040--Hb_000254_070 Hb_021576_070 Hb_021576_070 Hb_000679_040--Hb_021576_070 Hb_028639_030 Hb_028639_030 Hb_001216_110--Hb_028639_030 Hb_001216_110--Hb_021576_070 Hb_001216_110--Hb_001969_140 Hb_002129_020 Hb_002129_020 Hb_001216_110--Hb_002129_020 Hb_001216_110--Hb_001195_310 Hb_000167_040 Hb_000167_040 Hb_011310_050--Hb_000167_040 Hb_011310_050--Hb_001969_140 Hb_011310_050--Hb_001195_310 Hb_011310_050--Hb_001216_110 Hb_059741_010 Hb_059741_010 Hb_011310_050--Hb_059741_010 Hb_001195_310--Hb_000167_040 Hb_001195_310--Hb_001969_140 Hb_020586_010 Hb_020586_010 Hb_001195_310--Hb_020586_010 Hb_000997_070 Hb_000997_070 Hb_001195_310--Hb_000997_070 Hb_001969_140--Hb_000167_040 Hb_000959_300 Hb_000959_300 Hb_001969_140--Hb_000959_300 Hb_000003_310 Hb_000003_310 Hb_000254_070--Hb_000003_310 Hb_000701_030 Hb_000701_030 Hb_000254_070--Hb_000701_030 Hb_007317_020 Hb_007317_020 Hb_000254_070--Hb_007317_020 Hb_000418_020 Hb_000418_020 Hb_000254_070--Hb_000418_020 Hb_000494_030 Hb_000494_030 Hb_000254_070--Hb_000494_030 Hb_000152_710 Hb_000152_710 Hb_021576_070--Hb_000152_710 Hb_004109_050 Hb_004109_050 Hb_021576_070--Hb_004109_050 Hb_021576_070--Hb_000701_030 Hb_021576_070--Hb_000418_020 Hb_001754_020 Hb_001754_020 Hb_021576_070--Hb_001754_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.6051 24.0893 32.8559 111.479 19.2953 14.6651
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.09822 6.24191 17.0723 46.547 65.201

CAGE analysis