Hb_000003_310

Information

Type -
Description -
Location Contig3: 184747-190827
Sequence    

Annotation

kegg
ID tcc:TCM_042386
description Elongation defective 1 protein / ELD1 protein isoform 1
nr
ID XP_012068598.1
description PREDICTED: glycosyltransferase-like KOBITO 1 [Jatropha curcas]
swissprot
ID Q9C9Z9
description Glycosyltransferase-like KOBITO 1 OS=Arabidopsis thaliana GN=ELD1 PE=1 SV=1
trembl
ID A0A067L7K6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24489 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31401: 184782-190653 , PASA_asmbl_31402: 186582-186756
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000003_310 0.0 - - PREDICTED: glycosyltransferase-like KOBITO 1 [Jatropha curcas]
2 Hb_000254_070 0.0722779931 - - PREDICTED: protein disulfide isomerase-like 1-6 [Jatropha curcas]
3 Hb_000701_030 0.0812963708 - - Sodium/hydrogen exchanger 6 -like protein [Gossypium arboreum]
4 Hb_021576_070 0.0877699723 - - hypothetical protein PRUPE_ppa002736mg [Prunus persica]
5 Hb_000684_310 0.0928221941 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g67720 [Jatropha curcas]
6 Hb_000679_040 0.095774508 - - Cellulose synthase 1 [Theobroma cacao]
7 Hb_000418_020 0.0986103308 - - PREDICTED: sulfhydryl oxidase 2 isoform X1 [Jatropha curcas]
8 Hb_030565_110 0.098832506 - - PREDICTED: adenosylhomocysteinase 1 [Jatropha curcas]
9 Hb_000926_340 0.1070098905 - - PREDICTED: EH domain-containing protein 1 isoform X1 [Jatropha curcas]
10 Hb_004525_040 0.1071884636 - - PREDICTED: sugar transporter ERD6-like 6 [Jatropha curcas]
11 Hb_001006_270 0.1075691667 - - peptide transporter, putative [Ricinus communis]
12 Hb_000256_230 0.1107072998 - - PREDICTED: uncharacterized protein LOC105637594 [Jatropha curcas]
13 Hb_020586_010 0.1117613343 - - Alpha-N-arabinofuranosidase 1 precursor, putative [Ricinus communis]
14 Hb_000035_220 0.111861519 - - PREDICTED: transmembrane 9 superfamily member 8 [Jatropha curcas]
15 Hb_002072_010 0.111957524 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001216_110 0.1121153002 - - PREDICTED: protein GPR107-like [Jatropha curcas]
17 Hb_001195_310 0.1125711319 - - ATP binding protein, putative [Ricinus communis]
18 Hb_002367_110 0.1128462102 - - PREDICTED: cinnamyl alcohol dehydrogenase 1 [Sesamum indicum]
19 Hb_000265_140 0.1133511027 - - PREDICTED: transmembrane 9 superfamily member 12 [Jatropha curcas]
20 Hb_005062_110 0.1140225746 - - PREDICTED: transmembrane 9 superfamily member 1 [Jatropha curcas]

Gene co-expression network

sample Hb_000003_310 Hb_000003_310 Hb_000254_070 Hb_000254_070 Hb_000003_310--Hb_000254_070 Hb_000701_030 Hb_000701_030 Hb_000003_310--Hb_000701_030 Hb_021576_070 Hb_021576_070 Hb_000003_310--Hb_021576_070 Hb_000684_310 Hb_000684_310 Hb_000003_310--Hb_000684_310 Hb_000679_040 Hb_000679_040 Hb_000003_310--Hb_000679_040 Hb_000418_020 Hb_000418_020 Hb_000003_310--Hb_000418_020 Hb_000254_070--Hb_000701_030 Hb_000254_070--Hb_000679_040 Hb_007317_020 Hb_007317_020 Hb_000254_070--Hb_007317_020 Hb_000254_070--Hb_000418_020 Hb_000494_030 Hb_000494_030 Hb_000254_070--Hb_000494_030 Hb_000265_140 Hb_000265_140 Hb_000701_030--Hb_000265_140 Hb_000701_030--Hb_021576_070 Hb_000701_030--Hb_000494_030 Hb_001097_040 Hb_001097_040 Hb_000701_030--Hb_001097_040 Hb_000152_710 Hb_000152_710 Hb_021576_070--Hb_000152_710 Hb_004109_050 Hb_004109_050 Hb_021576_070--Hb_004109_050 Hb_001216_110 Hb_001216_110 Hb_021576_070--Hb_001216_110 Hb_021576_070--Hb_000418_020 Hb_001754_020 Hb_001754_020 Hb_021576_070--Hb_001754_020 Hb_000684_310--Hb_001216_110 Hb_009674_010 Hb_009674_010 Hb_000684_310--Hb_009674_010 Hb_000684_310--Hb_000679_040 Hb_000684_310--Hb_000254_070 Hb_001105_130 Hb_001105_130 Hb_000684_310--Hb_001105_130 Hb_000679_040--Hb_001216_110 Hb_011310_050 Hb_011310_050 Hb_000679_040--Hb_011310_050 Hb_001195_310 Hb_001195_310 Hb_000679_040--Hb_001195_310 Hb_001969_140 Hb_001969_140 Hb_000679_040--Hb_001969_140 Hb_000679_040--Hb_021576_070 Hb_000256_230 Hb_000256_230 Hb_000418_020--Hb_000256_230 Hb_000665_170 Hb_000665_170 Hb_000418_020--Hb_000665_170 Hb_002687_200 Hb_002687_200 Hb_000418_020--Hb_002687_200 Hb_002739_120 Hb_002739_120 Hb_000418_020--Hb_002739_120 Hb_003777_030 Hb_003777_030 Hb_000418_020--Hb_003777_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.30081 13.7825 13.9382 52.8794 8.58244 11.6906
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.7001 5.64416 5.70945 23.2795 23.6062

CAGE analysis