Hb_000265_140

Information

Type -
Description -
Location Contig265: 177074-179038
Sequence    

Annotation

kegg
ID rcu:RCOM_1211460
description Endosomal P24A protein precursor, putative
nr
ID XP_012084017.1
description PREDICTED: transmembrane 9 superfamily member 12 [Jatropha curcas]
swissprot
ID F4JRE0
description Transmembrane 9 superfamily member 12 OS=Arabidopsis thaliana GN=TMN12 PE=2 SV=1
trembl
ID A0A067LLD3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15029 PE=4 SV=1
Gene Ontology
ID GO:0005768
description transmembrane 9 superfamily member 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27699: 176752-179745
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000265_140 0.0 - - PREDICTED: transmembrane 9 superfamily member 12 [Jatropha curcas]
2 Hb_000701_030 0.0707019241 - - Sodium/hydrogen exchanger 6 -like protein [Gossypium arboreum]
3 Hb_002603_040 0.0792851806 - - PREDICTED: phosphoinositide phospholipase C 2-like [Jatropha curcas]
4 Hb_012194_060 0.079552401 - - PREDICTED: uncharacterized protein LOC105636108 [Jatropha curcas]
5 Hb_000085_260 0.0797050499 - - glycerophosphoryl diester phosphodiesterase, putative [Ricinus communis]
6 Hb_001754_020 0.0891172616 - - PREDICTED: kinesin-13A isoform X1 [Jatropha curcas]
7 Hb_021576_070 0.0897202851 - - hypothetical protein PRUPE_ppa002736mg [Prunus persica]
8 Hb_009252_030 0.092237566 - - PREDICTED: CASP-like protein 4A3 [Jatropha curcas]
9 Hb_001159_030 0.0929625 - - PREDICTED: probable protein S-acyltransferase 14 [Jatropha curcas]
10 Hb_002400_060 0.0935518438 - - PREDICTED: putative clathrin assembly protein At2g25430 [Jatropha curcas]
11 Hb_000679_100 0.0953759427 - - PREDICTED: probable sugar phosphate/phosphate translocator At5g25400 isoform X1 [Jatropha curcas]
12 Hb_001097_040 0.0979853553 - - PREDICTED: probable dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 3B [Jatropha curcas]
13 Hb_010042_030 0.0990562567 - - PREDICTED: UDP-N-acetylglucosamine diphosphorylase 1 [Jatropha curcas]
14 Hb_003994_220 0.1025347046 - - PREDICTED: V-type proton ATPase catalytic subunit A [Jatropha curcas]
15 Hb_033642_060 0.1028188232 - - PREDICTED: protein CHUP1, chloroplastic [Jatropha curcas]
16 Hb_000237_050 0.1031707041 - - CP2 [Hevea brasiliensis]
17 Hb_003097_140 0.1033398603 - - PREDICTED: glycosyltransferase-like KOBITO 1 [Jatropha curcas]
18 Hb_000494_030 0.1043879791 - - PREDICTED: uncharacterized protein LOC105643196 [Jatropha curcas]
19 Hb_000035_220 0.1051850793 - - PREDICTED: transmembrane 9 superfamily member 8 [Jatropha curcas]
20 Hb_001511_180 0.1057211519 - - Clathrin heavy chain 2 -like protein [Gossypium arboreum]

Gene co-expression network

sample Hb_000265_140 Hb_000265_140 Hb_000701_030 Hb_000701_030 Hb_000265_140--Hb_000701_030 Hb_002603_040 Hb_002603_040 Hb_000265_140--Hb_002603_040 Hb_012194_060 Hb_012194_060 Hb_000265_140--Hb_012194_060 Hb_000085_260 Hb_000085_260 Hb_000265_140--Hb_000085_260 Hb_001754_020 Hb_001754_020 Hb_000265_140--Hb_001754_020 Hb_021576_070 Hb_021576_070 Hb_000265_140--Hb_021576_070 Hb_000701_030--Hb_021576_070 Hb_000494_030 Hb_000494_030 Hb_000701_030--Hb_000494_030 Hb_000254_070 Hb_000254_070 Hb_000701_030--Hb_000254_070 Hb_000003_310 Hb_000003_310 Hb_000701_030--Hb_000003_310 Hb_001097_040 Hb_001097_040 Hb_000701_030--Hb_001097_040 Hb_000599_360 Hb_000599_360 Hb_002603_040--Hb_000599_360 Hb_002400_060 Hb_002400_060 Hb_002603_040--Hb_002400_060 Hb_002603_040--Hb_000085_260 Hb_002603_040--Hb_001754_020 Hb_002603_040--Hb_000494_030 Hb_002486_050 Hb_002486_050 Hb_012194_060--Hb_002486_050 Hb_000035_220 Hb_000035_220 Hb_012194_060--Hb_000035_220 Hb_005062_110 Hb_005062_110 Hb_012194_060--Hb_005062_110 Hb_012194_060--Hb_000085_260 Hb_012194_060--Hb_000701_030 Hb_001159_030 Hb_001159_030 Hb_000085_260--Hb_001159_030 Hb_010042_030 Hb_010042_030 Hb_000085_260--Hb_010042_030 Hb_000085_260--Hb_005062_110 Hb_000098_050 Hb_000098_050 Hb_000085_260--Hb_000098_050 Hb_000503_020 Hb_000503_020 Hb_000085_260--Hb_000503_020 Hb_000679_100 Hb_000679_100 Hb_000085_260--Hb_000679_100 Hb_003975_010 Hb_003975_010 Hb_001754_020--Hb_003975_010 Hb_001754_020--Hb_021576_070 Hb_001691_040 Hb_001691_040 Hb_001754_020--Hb_001691_040 Hb_010672_020 Hb_010672_020 Hb_001754_020--Hb_010672_020 Hb_002272_240 Hb_002272_240 Hb_001754_020--Hb_002272_240 Hb_116349_120 Hb_116349_120 Hb_001754_020--Hb_116349_120 Hb_000152_710 Hb_000152_710 Hb_021576_070--Hb_000152_710 Hb_004109_050 Hb_004109_050 Hb_021576_070--Hb_004109_050 Hb_001216_110 Hb_001216_110 Hb_021576_070--Hb_001216_110 Hb_000418_020 Hb_000418_020 Hb_021576_070--Hb_000418_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.7668 50.0926 37.2023 113.88 26.1292 33.4389
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.7654 12.0424 36.6233 50.3897 63.6489

CAGE analysis