Hb_000701_030

Information

Type -
Description -
Location Contig701: 99946-117498
Sequence    

Annotation

kegg
ID pmum:103324395
description sodium/hydrogen exchanger 6-like
nr
ID KHG02521.1
description Sodium/hydrogen exchanger 6 -like protein [Gossypium arboreum]
swissprot
ID Q8RWU6
description Sodium/hydrogen exchanger 6 OS=Arabidopsis thaliana GN=NHX6 PE=1 SV=3
trembl
ID A0A0B0MU90
description Sodium/hydrogen exchanger OS=Gossypium arboreum GN=F383_23980 PE=3 SV=1
Gene Ontology
ID GO:0015077
description sodium hydrogen exchanger 6-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54856: 100055-117651 , PASA_asmbl_54857: 100027-113294
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000701_030 0.0 - - Sodium/hydrogen exchanger 6 -like protein [Gossypium arboreum]
2 Hb_000265_140 0.0707019241 - - PREDICTED: transmembrane 9 superfamily member 12 [Jatropha curcas]
3 Hb_021576_070 0.0770515439 - - hypothetical protein PRUPE_ppa002736mg [Prunus persica]
4 Hb_000494_030 0.0779698188 - - PREDICTED: uncharacterized protein LOC105643196 [Jatropha curcas]
5 Hb_000254_070 0.0788233439 - - PREDICTED: protein disulfide isomerase-like 1-6 [Jatropha curcas]
6 Hb_000003_310 0.0812963708 - - PREDICTED: glycosyltransferase-like KOBITO 1 [Jatropha curcas]
7 Hb_001097_040 0.0814014479 - - PREDICTED: probable dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 3B [Jatropha curcas]
8 Hb_003994_220 0.0836456776 - - PREDICTED: V-type proton ATPase catalytic subunit A [Jatropha curcas]
9 Hb_021297_020 0.0846726959 - - Cyclic nucleotide-gated ion channel, putative [Ricinus communis]
10 Hb_001021_010 0.0874522626 - - PREDICTED: bifunctional protein FolD 2 [Jatropha curcas]
11 Hb_000418_020 0.0878036866 - - PREDICTED: sulfhydryl oxidase 2 isoform X1 [Jatropha curcas]
12 Hb_001226_130 0.0884963016 - - PREDICTED: aminopeptidase M1-like [Jatropha curcas]
13 Hb_000256_230 0.0902538331 - - PREDICTED: uncharacterized protein LOC105637594 [Jatropha curcas]
14 Hb_003097_140 0.0903750759 - - PREDICTED: glycosyltransferase-like KOBITO 1 [Jatropha curcas]
15 Hb_027445_020 0.0907089779 - - PREDICTED: glycosylphosphatidylinositol anchor attachment 1 protein [Jatropha curcas]
16 Hb_012194_060 0.0907458488 - - PREDICTED: uncharacterized protein LOC105636108 [Jatropha curcas]
17 Hb_001159_030 0.0933073817 - - PREDICTED: probable protein S-acyltransferase 14 [Jatropha curcas]
18 Hb_000035_330 0.0947641396 - - Transmembrane protein 85 [Theobroma cacao]
19 Hb_000390_050 0.0956498445 - - PREDICTED: GPCR-type G protein 1 [Jatropha curcas]
20 Hb_006683_020 0.0965250401 - - PREDICTED: nucleosome assembly protein 1;4 [Jatropha curcas]

Gene co-expression network

sample Hb_000701_030 Hb_000701_030 Hb_000265_140 Hb_000265_140 Hb_000701_030--Hb_000265_140 Hb_021576_070 Hb_021576_070 Hb_000701_030--Hb_021576_070 Hb_000494_030 Hb_000494_030 Hb_000701_030--Hb_000494_030 Hb_000254_070 Hb_000254_070 Hb_000701_030--Hb_000254_070 Hb_000003_310 Hb_000003_310 Hb_000701_030--Hb_000003_310 Hb_001097_040 Hb_001097_040 Hb_000701_030--Hb_001097_040 Hb_002603_040 Hb_002603_040 Hb_000265_140--Hb_002603_040 Hb_012194_060 Hb_012194_060 Hb_000265_140--Hb_012194_060 Hb_000085_260 Hb_000085_260 Hb_000265_140--Hb_000085_260 Hb_001754_020 Hb_001754_020 Hb_000265_140--Hb_001754_020 Hb_000265_140--Hb_021576_070 Hb_000152_710 Hb_000152_710 Hb_021576_070--Hb_000152_710 Hb_004109_050 Hb_004109_050 Hb_021576_070--Hb_004109_050 Hb_001216_110 Hb_001216_110 Hb_021576_070--Hb_001216_110 Hb_000418_020 Hb_000418_020 Hb_021576_070--Hb_000418_020 Hb_021576_070--Hb_001754_020 Hb_000683_050 Hb_000683_050 Hb_000494_030--Hb_000683_050 Hb_004030_060 Hb_004030_060 Hb_000494_030--Hb_004030_060 Hb_010390_010 Hb_010390_010 Hb_000494_030--Hb_010390_010 Hb_000494_030--Hb_021576_070 Hb_007416_070 Hb_007416_070 Hb_000494_030--Hb_007416_070 Hb_000254_070--Hb_000003_310 Hb_000679_040 Hb_000679_040 Hb_000254_070--Hb_000679_040 Hb_007317_020 Hb_007317_020 Hb_000254_070--Hb_007317_020 Hb_000254_070--Hb_000418_020 Hb_000254_070--Hb_000494_030 Hb_000003_310--Hb_021576_070 Hb_000684_310 Hb_000684_310 Hb_000003_310--Hb_000684_310 Hb_000003_310--Hb_000679_040 Hb_000003_310--Hb_000418_020 Hb_001085_080 Hb_001085_080 Hb_001097_040--Hb_001085_080 Hb_003038_040 Hb_003038_040 Hb_001097_040--Hb_003038_040 Hb_007137_050 Hb_007137_050 Hb_001097_040--Hb_007137_050 Hb_000023_300 Hb_000023_300 Hb_001097_040--Hb_000023_300 Hb_001159_030 Hb_001159_030 Hb_001097_040--Hb_001159_030 Hb_000152_700 Hb_000152_700 Hb_001097_040--Hb_000152_700
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.946085 2.58196 2.50041 6.76245 1.50575 2.04631
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.01857 1.16898 1.65217 3.88889 3.99127

CAGE analysis