Hb_021576_070

Information

Type -
Description -
Location Contig21576: 24786-29042
Sequence    

Annotation

kegg
ID rcu:RCOM_0920870
description Endosomal P24A protein precursor, putative
nr
ID XP_007221970.1
description hypothetical protein PRUPE_ppa002736mg [Prunus persica]
swissprot
ID F4KIB2
description Transmembrane 9 superfamily member 8 OS=Arabidopsis thaliana GN=TMN8 PE=2 SV=1
trembl
ID A0A067KMJ1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07081 PE=4 SV=1
Gene Ontology
ID GO:0016021
description transmembrane 9 superfamily member 4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22314: 24842-28919
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_021576_070 0.0 - - hypothetical protein PRUPE_ppa002736mg [Prunus persica]
2 Hb_000152_710 0.0660960938 - - PREDICTED: putative glycerol-3-phosphate transporter 1 [Jatropha curcas]
3 Hb_004109_050 0.0744264653 - - PREDICTED: putative callose synthase 8 [Jatropha curcas]
4 Hb_000701_030 0.0770515439 - - Sodium/hydrogen exchanger 6 -like protein [Gossypium arboreum]
5 Hb_001216_110 0.079708263 - - PREDICTED: protein GPR107-like [Jatropha curcas]
6 Hb_000418_020 0.0814287119 - - PREDICTED: sulfhydryl oxidase 2 isoform X1 [Jatropha curcas]
7 Hb_001754_020 0.0816075845 - - PREDICTED: kinesin-13A isoform X1 [Jatropha curcas]
8 Hb_000256_230 0.0870412576 - - PREDICTED: uncharacterized protein LOC105637594 [Jatropha curcas]
9 Hb_000003_310 0.0877699723 - - PREDICTED: glycosyltransferase-like KOBITO 1 [Jatropha curcas]
10 Hb_000494_030 0.0881243382 - - PREDICTED: uncharacterized protein LOC105643196 [Jatropha curcas]
11 Hb_000679_040 0.0885726911 - - Cellulose synthase 1 [Theobroma cacao]
12 Hb_000265_140 0.0897202851 - - PREDICTED: transmembrane 9 superfamily member 12 [Jatropha curcas]
13 Hb_000035_220 0.0910929642 - - PREDICTED: transmembrane 9 superfamily member 8 [Jatropha curcas]
14 Hb_000260_510 0.0919857872 - - PREDICTED: probable galacturonosyltransferase 7 isoform X3 [Jatropha curcas]
15 Hb_000254_070 0.09402218 - - PREDICTED: protein disulfide isomerase-like 1-6 [Jatropha curcas]
16 Hb_003540_080 0.0956643993 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
17 Hb_007537_030 0.0964126995 - - PREDICTED: gamma aminobutyrate transaminase 3, chloroplastic [Jatropha curcas]
18 Hb_028639_030 0.0968154919 - - PREDICTED: transmembrane 9 superfamily member 2-like [Jatropha curcas]
19 Hb_012194_060 0.0979205856 - - PREDICTED: uncharacterized protein LOC105636108 [Jatropha curcas]
20 Hb_000570_020 0.0979765519 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX9H isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_021576_070 Hb_021576_070 Hb_000152_710 Hb_000152_710 Hb_021576_070--Hb_000152_710 Hb_004109_050 Hb_004109_050 Hb_021576_070--Hb_004109_050 Hb_000701_030 Hb_000701_030 Hb_021576_070--Hb_000701_030 Hb_001216_110 Hb_001216_110 Hb_021576_070--Hb_001216_110 Hb_000418_020 Hb_000418_020 Hb_021576_070--Hb_000418_020 Hb_001754_020 Hb_001754_020 Hb_021576_070--Hb_001754_020 Hb_000152_710--Hb_004109_050 Hb_007537_030 Hb_007537_030 Hb_000152_710--Hb_007537_030 Hb_001545_130 Hb_001545_130 Hb_000152_710--Hb_001545_130 Hb_019280_020 Hb_019280_020 Hb_000152_710--Hb_019280_020 Hb_000494_030 Hb_000494_030 Hb_000152_710--Hb_000494_030 Hb_004109_050--Hb_001754_020 Hb_004109_050--Hb_001545_130 Hb_000570_020 Hb_000570_020 Hb_004109_050--Hb_000570_020 Hb_000395_110 Hb_000395_110 Hb_004109_050--Hb_000395_110 Hb_000265_140 Hb_000265_140 Hb_000701_030--Hb_000265_140 Hb_000701_030--Hb_000494_030 Hb_000254_070 Hb_000254_070 Hb_000701_030--Hb_000254_070 Hb_000003_310 Hb_000003_310 Hb_000701_030--Hb_000003_310 Hb_001097_040 Hb_001097_040 Hb_000701_030--Hb_001097_040 Hb_000679_040 Hb_000679_040 Hb_001216_110--Hb_000679_040 Hb_028639_030 Hb_028639_030 Hb_001216_110--Hb_028639_030 Hb_001969_140 Hb_001969_140 Hb_001216_110--Hb_001969_140 Hb_002129_020 Hb_002129_020 Hb_001216_110--Hb_002129_020 Hb_001195_310 Hb_001195_310 Hb_001216_110--Hb_001195_310 Hb_000256_230 Hb_000256_230 Hb_000418_020--Hb_000256_230 Hb_000665_170 Hb_000665_170 Hb_000418_020--Hb_000665_170 Hb_002687_200 Hb_002687_200 Hb_000418_020--Hb_002687_200 Hb_002739_120 Hb_002739_120 Hb_000418_020--Hb_002739_120 Hb_003777_030 Hb_003777_030 Hb_000418_020--Hb_003777_030 Hb_003975_010 Hb_003975_010 Hb_001754_020--Hb_003975_010 Hb_001691_040 Hb_001691_040 Hb_001754_020--Hb_001691_040 Hb_010672_020 Hb_010672_020 Hb_001754_020--Hb_010672_020 Hb_002272_240 Hb_002272_240 Hb_001754_020--Hb_002272_240 Hb_116349_120 Hb_116349_120 Hb_001754_020--Hb_116349_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.277 45.5646 61.2863 156.039 25.3467 26.4184
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.1127 17.6117 34.3978 61.7641 77.4527

CAGE analysis