Hb_000023_300

Information

Type -
Description -
Location Contig23: 517700-521091
Sequence    

Annotation

kegg
ID rcu:RCOM_0920720
description Ubiquitin carboxyl-terminal hydrolase, putative (EC:3.1.2.15)
nr
ID XP_002515408.1
description Ubiquitin carboxyl-terminal hydrolase, putative [Ricinus communis]
swissprot
ID Q9LEW0
description Ubiquitin carboxyl-terminal hydrolase 22 OS=Arabidopsis thaliana GN=UBP22 PE=2 SV=1
trembl
ID B9RNT9
description Ubiquitinyl hydrolase 1 OS=Ricinus communis GN=RCOM_0920720 PE=4 SV=1
Gene Ontology
ID GO:0008270
description ubiquitin carboxyl-terminal hydrolase 22

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23962: 518018-518466
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000023_300 0.0 - - Ubiquitin carboxyl-terminal hydrolase, putative [Ricinus communis]
2 Hb_012262_030 0.0628444041 - - PREDICTED: thylakoidal processing peptidase 1, chloroplastic-like [Jatropha curcas]
3 Hb_000227_160 0.0736356675 - - PREDICTED: E3 ubiquitin-protein ligase RHF1A [Jatropha curcas]
4 Hb_001097_040 0.0769464824 - - PREDICTED: probable dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 3B [Jatropha curcas]
5 Hb_001051_070 0.079294906 - - PREDICTED: protein ENHANCED DISEASE RESISTANCE 2 isoform X2 [Jatropha curcas]
6 Hb_010672_020 0.081428006 - - PREDICTED: ATP synthase gamma chain, chloroplastic-like [Jatropha curcas]
7 Hb_008748_030 0.0819727133 - - conserved hypothetical protein [Ricinus communis]
8 Hb_003020_100 0.0823513011 - - PREDICTED: transcription initiation factor IIA large subunit [Jatropha curcas]
9 Hb_000085_450 0.0827916708 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 20 [Jatropha curcas]
10 Hb_000705_230 0.0849907836 - - PREDICTED: serine/threonine-protein phosphatase PP1 isozyme 2 [Jatropha curcas]
11 Hb_006006_040 0.0854400213 - - S-methyl-5-thioribose kinase isoform 2 [Theobroma cacao]
12 Hb_023344_150 0.0854993541 - - PREDICTED: uncharacterized protein LOC105644462 [Jatropha curcas]
13 Hb_000322_080 0.0889725002 - - hypothetical protein JCGZ_07423 [Jatropha curcas]
14 Hb_000679_100 0.0892492004 - - PREDICTED: probable sugar phosphate/phosphate translocator At5g25400 isoform X1 [Jatropha curcas]
15 Hb_001454_230 0.0895190958 - - PREDICTED: kinesin-13A isoform X1 [Jatropha curcas]
16 Hb_000703_330 0.0899161191 - - conserved hypothetical protein [Ricinus communis]
17 Hb_007286_020 0.0911131118 - - hypothetical protein L484_010675 [Morus notabilis]
18 Hb_028487_160 0.0920725375 - - clathrin assembly protein, putative [Ricinus communis]
19 Hb_008289_040 0.0928087826 - - PREDICTED: suppressor of mec-8 and unc-52 protein homolog 1 [Jatropha curcas]
20 Hb_000853_200 0.0928159666 - - PREDICTED: uncharacterized protein LOC105642574 [Jatropha curcas]

Gene co-expression network

sample Hb_000023_300 Hb_000023_300 Hb_012262_030 Hb_012262_030 Hb_000023_300--Hb_012262_030 Hb_000227_160 Hb_000227_160 Hb_000023_300--Hb_000227_160 Hb_001097_040 Hb_001097_040 Hb_000023_300--Hb_001097_040 Hb_001051_070 Hb_001051_070 Hb_000023_300--Hb_001051_070 Hb_010672_020 Hb_010672_020 Hb_000023_300--Hb_010672_020 Hb_008748_030 Hb_008748_030 Hb_000023_300--Hb_008748_030 Hb_012262_030--Hb_000227_160 Hb_004994_180 Hb_004994_180 Hb_012262_030--Hb_004994_180 Hb_189216_010 Hb_189216_010 Hb_012262_030--Hb_189216_010 Hb_012262_030--Hb_008748_030 Hb_001454_230 Hb_001454_230 Hb_012262_030--Hb_001454_230 Hb_000227_160--Hb_008748_030 Hb_028487_160 Hb_028487_160 Hb_000227_160--Hb_028487_160 Hb_000367_090 Hb_000367_090 Hb_000227_160--Hb_000367_090 Hb_008289_040 Hb_008289_040 Hb_000227_160--Hb_008289_040 Hb_000029_190 Hb_000029_190 Hb_000227_160--Hb_000029_190 Hb_001085_080 Hb_001085_080 Hb_001097_040--Hb_001085_080 Hb_003038_040 Hb_003038_040 Hb_001097_040--Hb_003038_040 Hb_007137_050 Hb_007137_050 Hb_001097_040--Hb_007137_050 Hb_001159_030 Hb_001159_030 Hb_001097_040--Hb_001159_030 Hb_000152_700 Hb_000152_700 Hb_001097_040--Hb_000152_700 Hb_000477_100 Hb_000477_100 Hb_001051_070--Hb_000477_100 Hb_007286_020 Hb_007286_020 Hb_001051_070--Hb_007286_020 Hb_011214_160 Hb_011214_160 Hb_001051_070--Hb_011214_160 Hb_003998_040 Hb_003998_040 Hb_001051_070--Hb_003998_040 Hb_000679_100 Hb_000679_100 Hb_001051_070--Hb_000679_100 Hb_011310_110 Hb_011310_110 Hb_010672_020--Hb_011310_110 Hb_000705_230 Hb_000705_230 Hb_010672_020--Hb_000705_230 Hb_000665_170 Hb_000665_170 Hb_010672_020--Hb_000665_170 Hb_000395_110 Hb_000395_110 Hb_010672_020--Hb_000395_110 Hb_007545_010 Hb_007545_010 Hb_010672_020--Hb_007545_010 Hb_006120_050 Hb_006120_050 Hb_010672_020--Hb_006120_050 Hb_000012_310 Hb_000012_310 Hb_008748_030--Hb_000012_310 Hb_006452_120 Hb_006452_120 Hb_008748_030--Hb_006452_120 Hb_000574_450 Hb_000574_450 Hb_008748_030--Hb_000574_450 Hb_008748_030--Hb_028487_160 Hb_000778_010 Hb_000778_010 Hb_008748_030--Hb_000778_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.30737 3.57051 3.72302 8.30466 1.5934 2.10615
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.1542 2.405 2.9805 4.59812 3.56918

CAGE analysis