Hb_004994_180

Information

Type -
Description -
Location Contig4994: 102596-111574
Sequence    

Annotation

kegg
ID rcu:RCOM_1614520
description malic enzyme, putative (EC:1.1.1.39)
nr
ID XP_002511819.1
description malic enzyme, putative [Ricinus communis]
swissprot
ID P37225
description NAD-dependent malic enzyme 59 kDa isoform, mitochondrial OS=Solanum tuberosum PE=1 SV=1
trembl
ID B9RDN0
description Malic enzyme OS=Ricinus communis GN=RCOM_1614520 PE=3 SV=1
Gene Ontology
ID GO:0009507
description nad-dependent malic enzyme 59 kda mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45637: 102658-111524
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004994_180 0.0 - - malic enzyme, putative [Ricinus communis]
2 Hb_012262_030 0.0702465464 - - PREDICTED: thylakoidal processing peptidase 1, chloroplastic-like [Jatropha curcas]
3 Hb_000705_230 0.0850390217 - - PREDICTED: serine/threonine-protein phosphatase PP1 isozyme 2 [Jatropha curcas]
4 Hb_000638_130 0.0867505249 - - PREDICTED: SAL1 phosphatase-like [Jatropha curcas]
5 Hb_000510_170 0.091327214 - - Glycosyltransferase QUASIMODO1, putative [Ricinus communis]
6 Hb_000120_810 0.0987234855 - - serine/threonine-protein kinase cx32, putative [Ricinus communis]
7 Hb_189216_010 0.0988421514 - - PREDICTED: uncharacterized protein LOC105642236 isoform X1 [Jatropha curcas]
8 Hb_000069_640 0.0992567102 - - PREDICTED: tubulin gamma-1 chain [Vitis vinifera]
9 Hb_053709_050 0.0994003462 - - PREDICTED: nudix hydrolase 23, chloroplastic isoform X2 [Jatropha curcas]
10 Hb_002693_030 0.0995823685 - - PREDICTED: mitochondrial outer membrane protein porin of 34 kDa [Jatropha curcas]
11 Hb_026198_010 0.1003433551 - - PREDICTED: uncharacterized protein LOC105634369 isoform X1 [Jatropha curcas]
12 Hb_000012_240 0.1003859141 - - PREDICTED: ferrochelatase-2, chloroplastic [Jatropha curcas]
13 Hb_000227_160 0.101992871 - - PREDICTED: E3 ubiquitin-protein ligase RHF1A [Jatropha curcas]
14 Hb_002445_030 0.1026327253 - - hypothetical protein JCGZ_12656 [Jatropha curcas]
15 Hb_010672_020 0.1042918536 - - PREDICTED: ATP synthase gamma chain, chloroplastic-like [Jatropha curcas]
16 Hb_005653_070 0.104395384 - - K+ transport growth defect-like protein [Hevea brasiliensis]
17 Hb_028928_010 0.1047660389 - - hypothetical protein CISIN_1g0030132mg, partial [Citrus sinensis]
18 Hb_000964_030 0.1052511521 - - ADP/ATP carrier 2 [Theobroma cacao]
19 Hb_172426_030 0.1078691139 - - acetylglucosaminyltransferase, putative [Ricinus communis]
20 Hb_000017_260 0.1083396859 - - hypothetical protein POPTR_0003s13070g [Populus trichocarpa]

Gene co-expression network

sample Hb_004994_180 Hb_004994_180 Hb_012262_030 Hb_012262_030 Hb_004994_180--Hb_012262_030 Hb_000705_230 Hb_000705_230 Hb_004994_180--Hb_000705_230 Hb_000638_130 Hb_000638_130 Hb_004994_180--Hb_000638_130 Hb_000510_170 Hb_000510_170 Hb_004994_180--Hb_000510_170 Hb_000120_810 Hb_000120_810 Hb_004994_180--Hb_000120_810 Hb_189216_010 Hb_189216_010 Hb_004994_180--Hb_189216_010 Hb_000227_160 Hb_000227_160 Hb_012262_030--Hb_000227_160 Hb_000023_300 Hb_000023_300 Hb_012262_030--Hb_000023_300 Hb_012262_030--Hb_189216_010 Hb_008748_030 Hb_008748_030 Hb_012262_030--Hb_008748_030 Hb_001454_230 Hb_001454_230 Hb_012262_030--Hb_001454_230 Hb_010672_020 Hb_010672_020 Hb_000705_230--Hb_010672_020 Hb_011310_110 Hb_011310_110 Hb_000705_230--Hb_011310_110 Hb_001633_200 Hb_001633_200 Hb_000705_230--Hb_001633_200 Hb_000703_190 Hb_000703_190 Hb_000705_230--Hb_000703_190 Hb_000197_020 Hb_000197_020 Hb_000705_230--Hb_000197_020 Hb_000069_640 Hb_000069_640 Hb_000705_230--Hb_000069_640 Hb_000025_350 Hb_000025_350 Hb_000638_130--Hb_000025_350 Hb_001014_060 Hb_001014_060 Hb_000638_130--Hb_001014_060 Hb_005686_130 Hb_005686_130 Hb_000638_130--Hb_005686_130 Hb_000638_130--Hb_000510_170 Hb_003913_130 Hb_003913_130 Hb_000638_130--Hb_003913_130 Hb_065968_010 Hb_065968_010 Hb_000638_130--Hb_065968_010 Hb_116349_120 Hb_116349_120 Hb_000510_170--Hb_116349_120 Hb_001141_240 Hb_001141_240 Hb_000510_170--Hb_001141_240 Hb_000979_130 Hb_000979_130 Hb_000510_170--Hb_000979_130 Hb_000666_010 Hb_000666_010 Hb_000510_170--Hb_000666_010 Hb_002445_030 Hb_002445_030 Hb_000510_170--Hb_002445_030 Hb_000704_030 Hb_000704_030 Hb_000120_810--Hb_000704_030 Hb_026198_010 Hb_026198_010 Hb_000120_810--Hb_026198_010 Hb_004079_130 Hb_004079_130 Hb_000120_810--Hb_004079_130 Hb_000603_160 Hb_000603_160 Hb_000120_810--Hb_000603_160 Hb_000120_810--Hb_189216_010 Hb_000680_120 Hb_000680_120 Hb_000120_810--Hb_000680_120 Hb_005563_070 Hb_005563_070 Hb_189216_010--Hb_005563_070 Hb_189216_010--Hb_000603_160 Hb_002471_090 Hb_002471_090 Hb_189216_010--Hb_002471_090 Hb_000778_010 Hb_000778_010 Hb_189216_010--Hb_000778_010 Hb_189216_010--Hb_008748_030 Hb_002272_030 Hb_002272_030 Hb_189216_010--Hb_002272_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.3261 18.4211 27.1381 34.4209 4.94938 5.48747
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.2181 13.3196 18.5905 16.996 18.4785

CAGE analysis