Hb_000705_230

Information

Type -
Description -
Location Contig705: 131252-134723
Sequence    

Annotation

kegg
ID pop:POPTR_0001s25260g
description POPTRDRAFT_641133; Serine/threonine protein phosphatase PP1 isozyme 1
nr
ID XP_012066949.1
description PREDICTED: serine/threonine-protein phosphatase PP1 isozyme 2 [Jatropha curcas]
swissprot
ID O04857
description Serine/threonine-protein phosphatase PP1 isozyme 2 OS=Nicotiana tabacum GN=NPP2 PE=2 SV=1
trembl
ID A0A067L196
description Serine/threonine-protein phosphatase OS=Jatropha curcas GN=JCGZ_02927 PE=3 SV=1
Gene Ontology
ID GO:0000164
description serine threonine-protein phosphatase pp1 isozyme 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55081: 131128-134698
cDNA
(Sanger)
(ID:Location)		 003_K14.ab1: 131128-133930 , 006_F03.ab1: 131128-133929

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000705_230 0.0 - - PREDICTED: serine/threonine-protein phosphatase PP1 isozyme 2 [Jatropha curcas]
2 Hb_010672_020 0.0594570516 - - PREDICTED: ATP synthase gamma chain, chloroplastic-like [Jatropha curcas]
3 Hb_011310_110 0.0731734554 - - PREDICTED: probable sugar phosphate/phosphate translocator At5g25400 isoform X1 [Jatropha curcas]
4 Hb_001633_200 0.0743497614 - - hypothetical protein B456_005G137400 [Gossypium raimondii]
5 Hb_000703_190 0.0765132824 - - PREDICTED: serine/threonine-protein kinase EDR1 isoform X1 [Jatropha curcas]
6 Hb_000197_020 0.0791921958 - - PREDICTED: protein RER1A [Jatropha curcas]
7 Hb_000069_640 0.0794312935 - - PREDICTED: tubulin gamma-1 chain [Vitis vinifera]
8 Hb_012262_030 0.0843652697 - - PREDICTED: thylakoidal processing peptidase 1, chloroplastic-like [Jatropha curcas]
9 Hb_000023_300 0.0849907836 - - Ubiquitin carboxyl-terminal hydrolase, putative [Ricinus communis]
10 Hb_004994_180 0.0850390217 - - malic enzyme, putative [Ricinus communis]
11 Hb_089839_010 0.0880835364 - - PREDICTED: probable xyloglucan glycosyltransferase 6 [Jatropha curcas]
12 Hb_065968_010 0.0888844955 - - PREDICTED: probable glycosyltransferase At3g07620 isoform X2 [Jatropha curcas]
13 Hb_000046_500 0.0899805671 - - PREDICTED: probable serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit TON2 [Jatropha curcas]
14 Hb_003777_200 0.0905577734 - - PREDICTED: uncharacterized protein LOC105640933 [Jatropha curcas]
15 Hb_007638_020 0.0907320362 - - PREDICTED: low-temperature-induced cysteine proteinase-like [Jatropha curcas]
16 Hb_001454_230 0.0912256819 - - PREDICTED: kinesin-13A isoform X1 [Jatropha curcas]
17 Hb_008748_030 0.0912596919 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000395_110 0.0919053254 - - PREDICTED: molybdate-anion transporter [Jatropha curcas]
19 Hb_000748_030 0.095244177 - - ATP binding protein, putative [Ricinus communis]
20 Hb_028928_010 0.0954846032 - - hypothetical protein CISIN_1g0030132mg, partial [Citrus sinensis]

Gene co-expression network

sample Hb_000705_230 Hb_000705_230 Hb_010672_020 Hb_010672_020 Hb_000705_230--Hb_010672_020 Hb_011310_110 Hb_011310_110 Hb_000705_230--Hb_011310_110 Hb_001633_200 Hb_001633_200 Hb_000705_230--Hb_001633_200 Hb_000703_190 Hb_000703_190 Hb_000705_230--Hb_000703_190 Hb_000197_020 Hb_000197_020 Hb_000705_230--Hb_000197_020 Hb_000069_640 Hb_000069_640 Hb_000705_230--Hb_000069_640 Hb_010672_020--Hb_011310_110 Hb_000665_170 Hb_000665_170 Hb_010672_020--Hb_000665_170 Hb_000395_110 Hb_000395_110 Hb_010672_020--Hb_000395_110 Hb_007545_010 Hb_007545_010 Hb_010672_020--Hb_007545_010 Hb_006120_050 Hb_006120_050 Hb_010672_020--Hb_006120_050 Hb_011310_110--Hb_006120_050 Hb_011310_110--Hb_007545_010 Hb_000049_020 Hb_000049_020 Hb_011310_110--Hb_000049_020 Hb_011310_110--Hb_000665_170 Hb_001507_120 Hb_001507_120 Hb_001633_200--Hb_001507_120 Hb_000395_280 Hb_000395_280 Hb_001633_200--Hb_000395_280 Hb_001633_200--Hb_000197_020 Hb_001633_200--Hb_010672_020 Hb_003777_200 Hb_003777_200 Hb_001633_200--Hb_003777_200 Hb_000260_460 Hb_000260_460 Hb_000703_190--Hb_000260_460 Hb_000078_140 Hb_000078_140 Hb_000703_190--Hb_000078_140 Hb_001817_170 Hb_001817_170 Hb_000703_190--Hb_001817_170 Hb_000139_080 Hb_000139_080 Hb_000703_190--Hb_000139_080 Hb_000317_040 Hb_000317_040 Hb_000703_190--Hb_000317_040 Hb_159809_070 Hb_159809_070 Hb_000703_190--Hb_159809_070 Hb_000066_030 Hb_000066_030 Hb_000197_020--Hb_000066_030 Hb_003998_040 Hb_003998_040 Hb_000197_020--Hb_003998_040 Hb_004055_120 Hb_004055_120 Hb_000197_020--Hb_004055_120 Hb_010407_140 Hb_010407_140 Hb_000197_020--Hb_010407_140 Hb_011214_160 Hb_011214_160 Hb_000197_020--Hb_011214_160 Hb_000080_130 Hb_000080_130 Hb_000069_640--Hb_000080_130 Hb_000603_160 Hb_000603_160 Hb_000069_640--Hb_000603_160 Hb_005653_070 Hb_005653_070 Hb_000069_640--Hb_005653_070 Hb_004754_050 Hb_004754_050 Hb_000069_640--Hb_004754_050 Hb_013394_050 Hb_013394_050 Hb_000069_640--Hb_013394_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.945 14.5927 27.7382 40.2364 10.152 9.65646
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.1997 14.8413 19.4111 18.8455 22.2473

CAGE analysis