Hb_013394_050

Information

Type -
Description -
Location Contig13394: 52341-60173
Sequence    

Annotation

kegg
ID pmum:103343995
description somatic embryogenesis receptor kinase 2
nr
ID XP_009773846.1
description PREDICTED: somatic embryogenesis receptor kinase 2 [Nicotiana sylvestris]
swissprot
ID Q94AG2
description Somatic embryogenesis receptor kinase 1 OS=Arabidopsis thaliana GN=SERK1 PE=1 SV=2
trembl
ID A7L4A3
description Somatic embryogenesis receptor kinase OS=Carica papaya PE=3 SV=1
Gene Ontology
ID GO:0016021
description somatic embryogenesis receptor kinase 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09540: 52160-60225 , PASA_asmbl_09541: 52160-57265 , PASA_asmbl_09542: 52166-56507
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_013394_050 0.0 - - PREDICTED: somatic embryogenesis receptor kinase 2 [Nicotiana sylvestris]
2 Hb_000069_640 0.0799750396 - - PREDICTED: tubulin gamma-1 chain [Vitis vinifera]
3 Hb_019181_030 0.0849235465 - - PREDICTED: LOW QUALITY PROTEIN: conserved oligomeric Golgi complex subunit 6-like [Pyrus x bretschneideri]
4 Hb_000197_020 0.0854445615 - - PREDICTED: protein RER1A [Jatropha curcas]
5 Hb_000244_170 0.0883685444 - - PREDICTED: proline-rich receptor-like protein kinase PERK2 [Jatropha curcas]
6 Hb_000742_020 0.0909406516 - - ARF GTPase activator, putative [Ricinus communis]
7 Hb_004055_120 0.0957348186 - - PREDICTED: uncharacterized protein LOC105631443 [Jatropha curcas]
8 Hb_001609_040 0.0970037629 - - hypothetical protein POPTR_0017s05650g [Populus trichocarpa]
9 Hb_005993_010 0.1014932631 - - PREDICTED: protein transport protein SEC13 homolog B [Jatropha curcas]
10 Hb_000152_600 0.1034587377 - - PREDICTED: protein jagunal homolog 1 [Jatropha curcas]
11 Hb_002110_100 0.1060377521 - - PREDICTED: pyridoxine/pyridoxamine 5'-phosphate oxidase 1, chloroplastic [Jatropha curcas]
12 Hb_007894_010 0.1085622671 - - PREDICTED: uncharacterized protein LOC105632963 [Jatropha curcas]
13 Hb_002184_090 0.1086675666 - - DNA binding protein, putative [Ricinus communis]
14 Hb_000127_140 0.108683605 - - transporter-related family protein [Populus trichocarpa]
15 Hb_000243_350 0.1105566403 - - PREDICTED: V-type proton ATPase 16 kDa proteolipid subunit [Tarenaya hassleriana]
16 Hb_005701_120 0.1108485396 - - PREDICTED: V-type proton ATPase 16 kDa proteolipid subunit [Cucumis sativus]
17 Hb_000748_030 0.1111126905 - - ATP binding protein, putative [Ricinus communis]
18 Hb_001754_080 0.1113307902 - - PREDICTED: protein RALF-like 33 [Jatropha curcas]
19 Hb_000060_050 0.1113792012 - - PREDICTED: uncharacterized protein LOC105649718 [Jatropha curcas]
20 Hb_003305_040 0.1113962377 - - AP47/50p mRNA family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_013394_050 Hb_013394_050 Hb_000069_640 Hb_000069_640 Hb_013394_050--Hb_000069_640 Hb_019181_030 Hb_019181_030 Hb_013394_050--Hb_019181_030 Hb_000197_020 Hb_000197_020 Hb_013394_050--Hb_000197_020 Hb_000244_170 Hb_000244_170 Hb_013394_050--Hb_000244_170 Hb_000742_020 Hb_000742_020 Hb_013394_050--Hb_000742_020 Hb_004055_120 Hb_004055_120 Hb_013394_050--Hb_004055_120 Hb_000080_130 Hb_000080_130 Hb_000069_640--Hb_000080_130 Hb_000603_160 Hb_000603_160 Hb_000069_640--Hb_000603_160 Hb_005653_070 Hb_005653_070 Hb_000069_640--Hb_005653_070 Hb_004754_050 Hb_004754_050 Hb_000069_640--Hb_004754_050 Hb_000705_230 Hb_000705_230 Hb_000069_640--Hb_000705_230 Hb_000152_600 Hb_000152_600 Hb_019181_030--Hb_000152_600 Hb_007390_020 Hb_007390_020 Hb_019181_030--Hb_007390_020 Hb_010368_050 Hb_010368_050 Hb_019181_030--Hb_010368_050 Hb_001609_040 Hb_001609_040 Hb_019181_030--Hb_001609_040 Hb_019181_030--Hb_000197_020 Hb_000066_030 Hb_000066_030 Hb_000197_020--Hb_000066_030 Hb_003998_040 Hb_003998_040 Hb_000197_020--Hb_003998_040 Hb_000197_020--Hb_004055_120 Hb_000197_020--Hb_000705_230 Hb_010407_140 Hb_010407_140 Hb_000197_020--Hb_010407_140 Hb_011214_160 Hb_011214_160 Hb_000197_020--Hb_011214_160 Hb_003244_020 Hb_003244_020 Hb_000244_170--Hb_003244_020 Hb_000062_330 Hb_000062_330 Hb_000244_170--Hb_000062_330 Hb_007894_010 Hb_007894_010 Hb_000244_170--Hb_007894_010 Hb_002184_090 Hb_002184_090 Hb_000244_170--Hb_002184_090 Hb_000244_170--Hb_000197_020 Hb_000742_020--Hb_001609_040 Hb_007441_080 Hb_007441_080 Hb_000742_020--Hb_007441_080 Hb_005993_010 Hb_005993_010 Hb_000742_020--Hb_005993_010 Hb_000742_020--Hb_000069_640 Hb_000742_020--Hb_000244_170 Hb_000256_150 Hb_000256_150 Hb_004055_120--Hb_000256_150 Hb_000787_160 Hb_000787_160 Hb_004055_120--Hb_000787_160 Hb_000917_130 Hb_000917_130 Hb_004055_120--Hb_000917_130 Hb_004055_120--Hb_003998_040 Hb_000300_270 Hb_000300_270 Hb_004055_120--Hb_000300_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.7891 6.59715 13.9354 26.7291 4.0938 7.77703
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.77689 10.5938 12.9186 6.49566 9.69962

CAGE analysis