Hb_000917_130

Information

Type -
Description -
Location Contig917: 163041-166950
Sequence    

Annotation

kegg
ID pop:POPTR_0012s10810g
description POPTRDRAFT_773261; hypothetical protein
nr
ID XP_012074207.1
description PREDICTED: uncharacterized protein LOC105635730 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KMR7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09828 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62278: 162786-164044 , PASA_asmbl_62279: 162815-163514 , PASA_asmbl_62280: 163311-163718
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000917_130 0.0 - - PREDICTED: uncharacterized protein LOC105635730 [Jatropha curcas]
2 Hb_004055_120 0.0755758843 - - PREDICTED: uncharacterized protein LOC105631443 [Jatropha curcas]
3 Hb_003529_030 0.0763407126 - - Non-imprinted in Prader-Willi/Angelman syndrome region protein, putative [Ricinus communis]
4 Hb_003998_040 0.0798243511 - - organic anion transporter, putative [Ricinus communis]
5 Hb_005218_020 0.0812174163 - - Uncharacterized protein isoform 3 [Theobroma cacao]
6 Hb_000256_150 0.0839478025 - - PREDICTED: trafficking protein particle complex II-specific subunit 120 homolog [Jatropha curcas]
7 Hb_000477_100 0.0841092763 - - PREDICTED: GDP-mannose transporter GONST4 [Jatropha curcas]
8 Hb_062537_010 0.091359413 - - hypothetical protein JCGZ_13884 [Jatropha curcas]
9 Hb_009569_040 0.0915367232 - - PREDICTED: uncharacterized protein LOC105635573 [Jatropha curcas]
10 Hb_003878_150 0.0919356927 - - PREDICTED: GPI mannosyltransferase 3 [Jatropha curcas]
11 Hb_003097_140 0.0922749392 - - PREDICTED: glycosyltransferase-like KOBITO 1 [Jatropha curcas]
12 Hb_091296_010 0.092944371 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
13 Hb_000787_160 0.093216073 - - PREDICTED: GDP-mannose transporter GONST1 isoform X1 [Jatropha curcas]
14 Hb_000258_240 0.0934232578 - - sur2 hydroxylase/desaturase, putative [Ricinus communis]
15 Hb_007481_010 0.0949314062 - - PREDICTED: TBC1 domain family member 22B [Jatropha curcas]
16 Hb_001633_080 0.0973906902 - - PREDICTED: V-type proton ATPase subunit C [Gossypium raimondii]
17 Hb_008748_030 0.0980936761 - - conserved hypothetical protein [Ricinus communis]
18 Hb_003025_100 0.0984794491 - - PREDICTED: serine/threonine-protein phosphatase 5 isoform X2 [Jatropha curcas]
19 Hb_000322_080 0.0997439892 - - hypothetical protein JCGZ_07423 [Jatropha curcas]
20 Hb_002928_090 0.1004500208 - - PREDICTED: metallocarboxypeptidase A-like protein TRV_02598 [Jatropha curcas]

Gene co-expression network

sample Hb_000917_130 Hb_000917_130 Hb_004055_120 Hb_004055_120 Hb_000917_130--Hb_004055_120 Hb_003529_030 Hb_003529_030 Hb_000917_130--Hb_003529_030 Hb_003998_040 Hb_003998_040 Hb_000917_130--Hb_003998_040 Hb_005218_020 Hb_005218_020 Hb_000917_130--Hb_005218_020 Hb_000256_150 Hb_000256_150 Hb_000917_130--Hb_000256_150 Hb_000477_100 Hb_000477_100 Hb_000917_130--Hb_000477_100 Hb_004055_120--Hb_000256_150 Hb_000787_160 Hb_000787_160 Hb_004055_120--Hb_000787_160 Hb_000197_020 Hb_000197_020 Hb_004055_120--Hb_000197_020 Hb_004055_120--Hb_003998_040 Hb_000300_270 Hb_000300_270 Hb_004055_120--Hb_000300_270 Hb_000258_240 Hb_000258_240 Hb_003529_030--Hb_000258_240 Hb_003529_030--Hb_000477_100 Hb_000060_050 Hb_000060_050 Hb_003529_030--Hb_000060_050 Hb_004129_140 Hb_004129_140 Hb_003529_030--Hb_004129_140 Hb_005504_050 Hb_005504_050 Hb_003529_030--Hb_005504_050 Hb_000066_030 Hb_000066_030 Hb_003998_040--Hb_000066_030 Hb_003998_040--Hb_005218_020 Hb_011214_160 Hb_011214_160 Hb_003998_040--Hb_011214_160 Hb_007765_040 Hb_007765_040 Hb_003998_040--Hb_007765_040 Hb_001633_080 Hb_001633_080 Hb_003998_040--Hb_001633_080 Hb_000371_090 Hb_000371_090 Hb_003998_040--Hb_000371_090 Hb_005218_020--Hb_000066_030 Hb_005218_020--Hb_007765_040 Hb_005218_020--Hb_003529_030 Hb_005218_020--Hb_004055_120 Hb_000049_020 Hb_000049_020 Hb_000256_150--Hb_000049_020 Hb_000256_150--Hb_000300_270 Hb_007481_010 Hb_007481_010 Hb_000256_150--Hb_007481_010 Hb_001269_330 Hb_001269_330 Hb_000256_150--Hb_001269_330 Hb_009569_040 Hb_009569_040 Hb_000256_150--Hb_009569_040 Hb_004452_110 Hb_004452_110 Hb_000256_150--Hb_004452_110 Hb_000477_100--Hb_007481_010 Hb_000046_500 Hb_000046_500 Hb_000477_100--Hb_000046_500 Hb_000352_300 Hb_000352_300 Hb_000477_100--Hb_000352_300 Hb_000146_040 Hb_000146_040 Hb_000477_100--Hb_000146_040 Hb_003097_140 Hb_003097_140 Hb_000477_100--Hb_003097_140 Hb_001051_070 Hb_001051_070 Hb_000477_100--Hb_001051_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.438053 0.342938 0.583236 1.34343 0.335304 0.648063
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.309224 0.632222 0.619381 0.726743 0.785937

CAGE analysis