Hb_004129_140

Information

Type -
Description -
Location Contig4129: 99625-110588
Sequence    

Annotation

kegg
ID rcu:RCOM_0539710
description Triose phosphate/phosphate translocator, non-green plastid, chloroplast precursor, putative
nr
ID XP_012070193.1
description PREDICTED: probable sugar phosphate/phosphate translocator At1g06470 [Jatropha curcas]
swissprot
ID Q8H184
description Probable sugar phosphate/phosphate translocator At1g06470 OS=Arabidopsis thaliana GN=At1g06470 PE=2 SV=1
trembl
ID A0A067KXW7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03934 PE=4 SV=1
Gene Ontology
ID GO:0016021
description probable sugar phosphate phosphate translocator at1g06470

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40896: 100025-109726 , PASA_asmbl_40897: 109729-110517
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004129_140 0.0 - - PREDICTED: probable sugar phosphate/phosphate translocator At1g06470 [Jatropha curcas]
2 Hb_002304_040 0.079406957 - - PREDICTED: uncharacterized protein LOC105649623 isoform X2 [Jatropha curcas]
3 Hb_003529_030 0.0838131573 - - Non-imprinted in Prader-Willi/Angelman syndrome region protein, putative [Ricinus communis]
4 Hb_000062_540 0.090320112 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000300_630 0.0925016956 - - PREDICTED: 5'-adenylylsulfate reductase-like 7 [Jatropha curcas]
6 Hb_009661_030 0.1008131877 - - PREDICTED: SPX and EXS domain-containing protein 1-like [Jatropha curcas]
7 Hb_005504_050 0.1015771547 - - putative protein [Arabidopsis thaliana]
8 Hb_006618_120 0.1020175877 - - PREDICTED: uncharacterized protein LOC105645969 [Jatropha curcas]
9 Hb_003141_070 0.1053517034 - - PREDICTED: probable protein phosphatase 2C 51 [Jatropha curcas]
10 Hb_004627_040 0.1111341964 - - hypothetical protein POPTR_0010s22770g [Populus trichocarpa]
11 Hb_000352_120 0.1117265842 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105630380 [Jatropha curcas]
12 Hb_000127_140 0.1124368223 - - transporter-related family protein [Populus trichocarpa]
13 Hb_000359_310 0.1132756665 - - hypothetical protein JCGZ_03934 [Jatropha curcas]
14 Hb_185255_010 0.1141061427 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 11-like [Jatropha curcas]
15 Hb_008246_060 0.1145253728 - - hypothetical protein F383_01577 [Gossypium arboreum]
16 Hb_000060_050 0.1159724749 - - PREDICTED: uncharacterized protein LOC105649718 [Jatropha curcas]
17 Hb_027380_220 0.1171686778 - - PREDICTED: probable beta-1,3-galactosyltransferase 20 [Jatropha curcas]
18 Hb_003929_270 0.1175567558 - - S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis]
19 Hb_000141_080 0.1177478557 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial isoform X1 [Brassica rapa]
20 Hb_072922_010 0.118106686 - - apolipoprotein d, putative [Ricinus communis]

Gene co-expression network

sample Hb_004129_140 Hb_004129_140 Hb_002304_040 Hb_002304_040 Hb_004129_140--Hb_002304_040 Hb_003529_030 Hb_003529_030 Hb_004129_140--Hb_003529_030 Hb_000062_540 Hb_000062_540 Hb_004129_140--Hb_000062_540 Hb_000300_630 Hb_000300_630 Hb_004129_140--Hb_000300_630 Hb_009661_030 Hb_009661_030 Hb_004129_140--Hb_009661_030 Hb_005504_050 Hb_005504_050 Hb_004129_140--Hb_005504_050 Hb_003141_070 Hb_003141_070 Hb_002304_040--Hb_003141_070 Hb_002304_040--Hb_000300_630 Hb_001024_020 Hb_001024_020 Hb_002304_040--Hb_001024_020 Hb_001482_040 Hb_001482_040 Hb_002304_040--Hb_001482_040 Hb_006618_120 Hb_006618_120 Hb_002304_040--Hb_006618_120 Hb_000258_240 Hb_000258_240 Hb_003529_030--Hb_000258_240 Hb_000917_130 Hb_000917_130 Hb_003529_030--Hb_000917_130 Hb_000477_100 Hb_000477_100 Hb_003529_030--Hb_000477_100 Hb_000060_050 Hb_000060_050 Hb_003529_030--Hb_000060_050 Hb_003529_030--Hb_005504_050 Hb_002289_060 Hb_002289_060 Hb_000062_540--Hb_002289_060 Hb_043792_040 Hb_043792_040 Hb_000062_540--Hb_043792_040 Hb_001936_130 Hb_001936_130 Hb_000062_540--Hb_001936_130 Hb_000352_120 Hb_000352_120 Hb_000062_540--Hb_000352_120 Hb_019181_040 Hb_019181_040 Hb_000062_540--Hb_019181_040 Hb_000300_630--Hb_006618_120 Hb_004627_040 Hb_004627_040 Hb_000300_630--Hb_004627_040 Hb_005023_010 Hb_005023_010 Hb_000300_630--Hb_005023_010 Hb_001018_110 Hb_001018_110 Hb_000300_630--Hb_001018_110 Hb_001699_100 Hb_001699_100 Hb_000300_630--Hb_001699_100 Hb_001633_130 Hb_001633_130 Hb_000300_630--Hb_001633_130 Hb_000359_310 Hb_000359_310 Hb_009661_030--Hb_000359_310 Hb_005800_030 Hb_005800_030 Hb_009661_030--Hb_005800_030 Hb_001104_130 Hb_001104_130 Hb_009661_030--Hb_001104_130 Hb_003878_200 Hb_003878_200 Hb_009661_030--Hb_003878_200 Hb_019181_030 Hb_019181_030 Hb_009661_030--Hb_019181_030 Hb_000487_270 Hb_000487_270 Hb_005504_050--Hb_000487_270 Hb_008279_040 Hb_008279_040 Hb_005504_050--Hb_008279_040 Hb_005504_050--Hb_004627_040 Hb_185255_010 Hb_185255_010 Hb_005504_050--Hb_185255_010 Hb_004607_090 Hb_004607_090 Hb_005504_050--Hb_004607_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.90631 2.421 4.03968 14.5096 5.20296 4.54664
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.38203 5.569 7.55387 3.6681 6.6446

CAGE analysis