Hb_001024_020

Information

Type -
Description -
Location Contig1024: 80234-83829
Sequence    

Annotation

kegg
ID rcu:RCOM_0880740
description Glucan endo-1,3-beta-glucosidase precursor, putative (EC:3.2.1.39)
nr
ID KDP35551.1
description hypothetical protein JCGZ_08989 [Jatropha curcas]
swissprot
ID Q9M088
description Glucan endo-1,3-beta-glucosidase 5 OS=Arabidopsis thaliana GN=At4g31140 PE=1 SV=1
trembl
ID A0A067KH36
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08989 PE=3 SV=1
Gene Ontology
ID GO:0042973
description glucan endo- -beta-glucosidase 5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01061: 80262-83831 , PASA_asmbl_01062: 81233-81510
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001024_020 0.0 - - hypothetical protein JCGZ_08989 [Jatropha curcas]
2 Hb_002289_080 0.088258506 - - hypothetical protein POPTR_0016s05590g [Populus trichocarpa]
3 Hb_000172_290 0.0885181556 - - PREDICTED: trafficking protein particle complex subunit 12 [Jatropha curcas]
4 Hb_024128_020 0.0921883024 - - PREDICTED: vacuolar cation/proton exchanger 5-like isoform X1 [Jatropha curcas]
5 Hb_054865_150 0.0949185185 - - PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Jatropha curcas]
6 Hb_022833_100 0.0954967929 - - PREDICTED: phosphatidate cytidylyltransferase 1 [Jatropha curcas]
7 Hb_005144_050 0.0964160385 - - PREDICTED: S-adenosylmethionine synthase 1 isoform X2 [Vitis vinifera]
8 Hb_002304_040 0.099343045 - - PREDICTED: uncharacterized protein LOC105649623 isoform X2 [Jatropha curcas]
9 Hb_027380_220 0.100984532 - - PREDICTED: probable beta-1,3-galactosyltransferase 20 [Jatropha curcas]
10 Hb_002685_210 0.1009936023 - - PREDICTED: BTB/POZ and MATH domain-containing protein 4 isoform X1 [Jatropha curcas]
11 Hb_000085_400 0.1026565985 - - Heterogeneous nuclear ribonucleoprotein 27C, putative [Ricinus communis]
12 Hb_001234_100 0.1027858892 - - PREDICTED: eyes absent homolog 2 isoform X1 [Jatropha curcas]
13 Hb_009328_020 0.1030389897 - - conserved hypothetical protein [Ricinus communis]
14 Hb_005023_010 0.1038947426 - - PREDICTED: putative lipase ROG1 [Jatropha curcas]
15 Hb_003141_070 0.1048981899 - - PREDICTED: probable protein phosphatase 2C 51 [Jatropha curcas]
16 Hb_029879_070 0.1051850502 - - PREDICTED: phospholipase A I [Jatropha curcas]
17 Hb_000260_010 0.105211826 - - PREDICTED: phospholipid-transporting ATPase 1-like [Jatropha curcas]
18 Hb_004935_060 0.1053227753 - - Uncharacterized protein isoform 2 [Theobroma cacao]
19 Hb_000066_080 0.1057095221 - - PREDICTED: mRNA cap guanine-N7 methyltransferase 2 isoform X2 [Jatropha curcas]
20 Hb_001018_110 0.1057896174 - - unnamed protein product [Coffea canephora]

Gene co-expression network

sample Hb_001024_020 Hb_001024_020 Hb_002289_080 Hb_002289_080 Hb_001024_020--Hb_002289_080 Hb_000172_290 Hb_000172_290 Hb_001024_020--Hb_000172_290 Hb_024128_020 Hb_024128_020 Hb_001024_020--Hb_024128_020 Hb_054865_150 Hb_054865_150 Hb_001024_020--Hb_054865_150 Hb_022833_100 Hb_022833_100 Hb_001024_020--Hb_022833_100 Hb_005144_050 Hb_005144_050 Hb_001024_020--Hb_005144_050 Hb_001168_020 Hb_001168_020 Hb_002289_080--Hb_001168_020 Hb_000310_090 Hb_000310_090 Hb_002289_080--Hb_000310_090 Hb_002289_080--Hb_005144_050 Hb_025194_100 Hb_025194_100 Hb_002289_080--Hb_025194_100 Hb_006478_020 Hb_006478_020 Hb_002289_080--Hb_006478_020 Hb_025098_010 Hb_025098_010 Hb_002289_080--Hb_025098_010 Hb_000172_290--Hb_054865_150 Hb_000254_090 Hb_000254_090 Hb_000172_290--Hb_000254_090 Hb_026198_070 Hb_026198_070 Hb_000172_290--Hb_026198_070 Hb_002685_210 Hb_002685_210 Hb_000172_290--Hb_002685_210 Hb_000172_290--Hb_006478_020 Hb_001971_010 Hb_001971_010 Hb_000172_290--Hb_001971_010 Hb_001004_070 Hb_001004_070 Hb_024128_020--Hb_001004_070 Hb_024128_020--Hb_005144_050 Hb_029879_070 Hb_029879_070 Hb_024128_020--Hb_029879_070 Hb_001366_180 Hb_001366_180 Hb_024128_020--Hb_001366_180 Hb_024128_020--Hb_006478_020 Hb_029510_050 Hb_029510_050 Hb_024128_020--Hb_029510_050 Hb_011037_030 Hb_011037_030 Hb_054865_150--Hb_011037_030 Hb_000156_010 Hb_000156_010 Hb_054865_150--Hb_000156_010 Hb_054865_150--Hb_000254_090 Hb_000318_290 Hb_000318_290 Hb_054865_150--Hb_000318_290 Hb_002110_190 Hb_002110_190 Hb_054865_150--Hb_002110_190 Hb_022833_100--Hb_000172_290 Hb_018292_010 Hb_018292_010 Hb_022833_100--Hb_018292_010 Hb_044736_010 Hb_044736_010 Hb_022833_100--Hb_044736_010 Hb_022833_100--Hb_002289_080 Hb_002445_120 Hb_002445_120 Hb_022833_100--Hb_002445_120 Hb_003777_310 Hb_003777_310 Hb_022833_100--Hb_003777_310 Hb_005144_050--Hb_001366_180 Hb_005144_050--Hb_025098_010 Hb_185255_010 Hb_185255_010 Hb_005144_050--Hb_185255_010 Hb_000289_110 Hb_000289_110 Hb_005144_050--Hb_000289_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.86413 6.87647 6.71099 24.1128 15.2213 24.1626
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.8025 16.5621 22.6818 10.8323 20.4054

CAGE analysis