Hb_001482_040

Information

Type -
Description -
Location Contig1482: 23015-25066
Sequence    

Annotation

kegg
ID rcu:RCOM_0604070
description hypothetical protein
nr
ID XP_002522387.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID D7LTJ4
description CASP-like protein ARALYDRAFT_485429 OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_485429 PE=3 SV=2
trembl
ID B9S8R8
description CASP-like protein OS=Ricinus communis GN=RCOM_0604070 PE=3 SV=1
Gene Ontology
ID GO:0005886
description casp-like protein aralydraft_485429

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12140: 23073-25040 , PASA_asmbl_12141: 23640-24585 , PASA_asmbl_12142: 23744-23888 , PASA_asmbl_12143: 23940-24097
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001482_040 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002304_040 0.0993927758 - - PREDICTED: uncharacterized protein LOC105649623 isoform X2 [Jatropha curcas]
3 Hb_000295_080 0.0999288973 - - PREDICTED: putative serine/threonine-protein kinase [Jatropha curcas]
4 Hb_000352_120 0.0999381113 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105630380 [Jatropha curcas]
5 Hb_000370_020 0.1079530004 - - conserved hypothetical protein [Ricinus communis]
6 Hb_090051_030 0.1086089085 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Jatropha curcas]
7 Hb_027380_220 0.1114488895 - - PREDICTED: probable beta-1,3-galactosyltransferase 20 [Jatropha curcas]
8 Hb_000705_120 0.1121652675 - - glycosyltransferase, putative [Ricinus communis]
9 Hb_082821_010 0.1144678883 - - PREDICTED: dephospho-CoA kinase-like [Jatropha curcas]
10 Hb_002078_160 0.1149185916 - - PREDICTED: probable arabinosyltransferase ARAD1 [Jatropha curcas]
11 Hb_000136_140 0.1153787461 - - PREDICTED: uncharacterized protein LOC105648960 [Jatropha curcas]
12 Hb_001004_070 0.116135638 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001633_130 0.1222435012 - - PREDICTED: uncharacterized protein LOC105630200 [Jatropha curcas]
14 Hb_002374_240 0.1252128572 - - nucellin, putative [Ricinus communis]
15 Hb_009328_020 0.1263008087 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001024_020 0.1274369541 - - hypothetical protein JCGZ_08989 [Jatropha curcas]
17 Hb_152202_010 0.1276197757 - - PREDICTED: inositol-tetrakisphosphate 1-kinase 1 [Jatropha curcas]
18 Hb_091296_010 0.1289005148 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
19 Hb_005291_050 0.1293001923 - - PREDICTED: mannan endo-1,4-beta-mannosidase 6-like isoform X1 [Jatropha curcas]
20 Hb_001279_030 0.1299276011 - - PREDICTED: serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' theta isoform-like [Jatropha curcas]

Gene co-expression network

sample Hb_001482_040 Hb_001482_040 Hb_002304_040 Hb_002304_040 Hb_001482_040--Hb_002304_040 Hb_000295_080 Hb_000295_080 Hb_001482_040--Hb_000295_080 Hb_000352_120 Hb_000352_120 Hb_001482_040--Hb_000352_120 Hb_000370_020 Hb_000370_020 Hb_001482_040--Hb_000370_020 Hb_090051_030 Hb_090051_030 Hb_001482_040--Hb_090051_030 Hb_027380_220 Hb_027380_220 Hb_001482_040--Hb_027380_220 Hb_003141_070 Hb_003141_070 Hb_002304_040--Hb_003141_070 Hb_004129_140 Hb_004129_140 Hb_002304_040--Hb_004129_140 Hb_000300_630 Hb_000300_630 Hb_002304_040--Hb_000300_630 Hb_001024_020 Hb_001024_020 Hb_002304_040--Hb_001024_020 Hb_006618_120 Hb_006618_120 Hb_002304_040--Hb_006618_120 Hb_001049_110 Hb_001049_110 Hb_000295_080--Hb_001049_110 Hb_002374_240 Hb_002374_240 Hb_000295_080--Hb_002374_240 Hb_000184_170 Hb_000184_170 Hb_000295_080--Hb_000184_170 Hb_000556_090 Hb_000556_090 Hb_000295_080--Hb_000556_090 Hb_000288_030 Hb_000288_030 Hb_000295_080--Hb_000288_030 Hb_001004_070 Hb_001004_070 Hb_000352_120--Hb_001004_070 Hb_000062_540 Hb_000062_540 Hb_000352_120--Hb_000062_540 Hb_001936_130 Hb_001936_130 Hb_000352_120--Hb_001936_130 Hb_003206_090 Hb_003206_090 Hb_000352_120--Hb_003206_090 Hb_001269_330 Hb_001269_330 Hb_000352_120--Hb_001269_330 Hb_000352_120--Hb_027380_220 Hb_000359_310 Hb_000359_310 Hb_000370_020--Hb_000359_310 Hb_005023_010 Hb_005023_010 Hb_000370_020--Hb_005023_010 Hb_012395_170 Hb_012395_170 Hb_000370_020--Hb_012395_170 Hb_000256_150 Hb_000256_150 Hb_000370_020--Hb_000256_150 Hb_000370_020--Hb_027380_220 Hb_002495_080 Hb_002495_080 Hb_000370_020--Hb_002495_080 Hb_082821_010 Hb_082821_010 Hb_090051_030--Hb_082821_010 Hb_001633_130 Hb_001633_130 Hb_090051_030--Hb_001633_130 Hb_000146_050 Hb_000146_050 Hb_090051_030--Hb_000146_050 Hb_090051_030--Hb_005023_010 Hb_033642_030 Hb_033642_030 Hb_090051_030--Hb_033642_030 Hb_006455_120 Hb_006455_120 Hb_090051_030--Hb_006455_120 Hb_000260_010 Hb_000260_010 Hb_027380_220--Hb_000260_010 Hb_027380_220--Hb_001936_130 Hb_005291_050 Hb_005291_050 Hb_027380_220--Hb_005291_050 Hb_029879_070 Hb_029879_070 Hb_027380_220--Hb_029879_070 Hb_027380_220--Hb_001004_070 Hb_001912_110 Hb_001912_110 Hb_027380_220--Hb_001912_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.0084 4.83479 13.8164 27.3848 22.7149 21.1132
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.95141 17.089 23.7496 7.8469 22.6216

CAGE analysis