Hb_006618_120

Information

Type -
Description -
Location Contig6618: 110491-117784
Sequence    

Annotation

kegg
ID pmum:103327135
description uncharacterized LOC103327135
nr
ID XP_012087114.1
description PREDICTED: uncharacterized protein LOC105645969 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JNQ2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20767 PE=4 SV=1
Gene Ontology
ID GO:0005507
description PREDICTED: uncharacterized protein LOC105645969

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53068: 109899-111916 , PASA_asmbl_53069: 110210-110473
cDNA
(Sanger)
(ID:Location)		 047_G15.ab1: 109899-111551

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006618_120 0.0 - - PREDICTED: uncharacterized protein LOC105645969 [Jatropha curcas]
2 Hb_000300_630 0.0632317623 - - PREDICTED: 5'-adenylylsulfate reductase-like 7 [Jatropha curcas]
3 Hb_002298_030 0.0663158897 - - PREDICTED: coenzyme Q-binding protein COQ10 homolog, mitochondrial [Jatropha curcas]
4 Hb_004627_040 0.0665136175 - - hypothetical protein POPTR_0010s22770g [Populus trichocarpa]
5 Hb_008246_060 0.0724074918 - - hypothetical protein F383_01577 [Gossypium arboreum]
6 Hb_013575_010 0.0763415605 - - Hepatocyte growth factor-regulated tyrosine kinase substrate, putative [Ricinus communis]
7 Hb_000116_270 0.0788506511 - - PREDICTED: SRSF protein kinase 2-like [Jatropha curcas]
8 Hb_030736_020 0.0803836844 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001159_130 0.08171061 - - PREDICTED: protein cornichon homolog 4 [Jatropha curcas]
10 Hb_154948_040 0.0819374165 - - hypothetical protein B456_013G043800 [Gossypium raimondii]
11 Hb_001633_130 0.0820422432 - - PREDICTED: uncharacterized protein LOC105630200 [Jatropha curcas]
12 Hb_003502_090 0.0821002817 - - ATP synthase subunit d, putative [Ricinus communis]
13 Hb_017895_040 0.082238089 - - hypothetical protein POPTR_0006s08120g [Populus trichocarpa]
14 Hb_002053_140 0.0837362394 - - PREDICTED: coatomer subunit epsilon-1 [Jatropha curcas]
15 Hb_003057_060 0.0851048061 - - conserved hypothetical protein [Ricinus communis]
16 Hb_003025_100 0.0860708942 - - PREDICTED: serine/threonine-protein phosphatase 5 isoform X2 [Jatropha curcas]
17 Hb_000345_310 0.0880791431 - - PREDICTED: sucrose nonfermenting 4-like protein isoform X3 [Jatropha curcas]
18 Hb_002641_060 0.0881187879 - - prefoldin subunit, putative [Ricinus communis]
19 Hb_001427_160 0.0887095249 - - o-methyltransferase, putative [Ricinus communis]
20 Hb_000141_080 0.0900724024 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial isoform X1 [Brassica rapa]

Gene co-expression network

sample Hb_006618_120 Hb_006618_120 Hb_000300_630 Hb_000300_630 Hb_006618_120--Hb_000300_630 Hb_002298_030 Hb_002298_030 Hb_006618_120--Hb_002298_030 Hb_004627_040 Hb_004627_040 Hb_006618_120--Hb_004627_040 Hb_008246_060 Hb_008246_060 Hb_006618_120--Hb_008246_060 Hb_013575_010 Hb_013575_010 Hb_006618_120--Hb_013575_010 Hb_000116_270 Hb_000116_270 Hb_006618_120--Hb_000116_270 Hb_000300_630--Hb_004627_040 Hb_005023_010 Hb_005023_010 Hb_000300_630--Hb_005023_010 Hb_001018_110 Hb_001018_110 Hb_000300_630--Hb_001018_110 Hb_001699_100 Hb_001699_100 Hb_000300_630--Hb_001699_100 Hb_001633_130 Hb_001633_130 Hb_000300_630--Hb_001633_130 Hb_004032_030 Hb_004032_030 Hb_002298_030--Hb_004032_030 Hb_005054_080 Hb_005054_080 Hb_002298_030--Hb_005054_080 Hb_005695_120 Hb_005695_120 Hb_002298_030--Hb_005695_120 Hb_154948_040 Hb_154948_040 Hb_002298_030--Hb_154948_040 Hb_002298_030--Hb_000300_630 Hb_004627_040--Hb_013575_010 Hb_030736_020 Hb_030736_020 Hb_004627_040--Hb_030736_020 Hb_004990_010 Hb_004990_010 Hb_004627_040--Hb_004990_010 Hb_004627_040--Hb_008246_060 Hb_003057_060 Hb_003057_060 Hb_008246_060--Hb_003057_060 Hb_024439_010 Hb_024439_010 Hb_008246_060--Hb_024439_010 Hb_008246_060--Hb_013575_010 Hb_001511_060 Hb_001511_060 Hb_008246_060--Hb_001511_060 Hb_013575_010--Hb_003057_060 Hb_002641_060 Hb_002641_060 Hb_013575_010--Hb_002641_060 Hb_000260_350 Hb_000260_350 Hb_013575_010--Hb_000260_350 Hb_000375_350 Hb_000375_350 Hb_013575_010--Hb_000375_350 Hb_000666_100 Hb_000666_100 Hb_013575_010--Hb_000666_100 Hb_002681_100 Hb_002681_100 Hb_013575_010--Hb_002681_100 Hb_001159_130 Hb_001159_130 Hb_000116_270--Hb_001159_130 Hb_001016_120 Hb_001016_120 Hb_000116_270--Hb_001016_120 Hb_000200_020 Hb_000200_020 Hb_000116_270--Hb_000200_020 Hb_084646_010 Hb_084646_010 Hb_000116_270--Hb_084646_010 Hb_006478_020 Hb_006478_020 Hb_000116_270--Hb_006478_020 Hb_000477_060 Hb_000477_060 Hb_000116_270--Hb_000477_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.433 6.76516 11.6304 26.7518 11.0768 13.3557
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.0602 19.0205 17.0995 9.955 12.2033

CAGE analysis