Hb_008246_060

Information

Type -
Description -
Location Contig8246: 48196-58126
Sequence    

Annotation

kegg
ID pop:POPTR_0004s17050g
description POPTRDRAFT_759753; 3-oxo-5-alpha-steroid 4-dehydrogenase family protein
nr
ID KHG30045.1
description hypothetical protein F383_01577 [Gossypium arboreum]
swissprot
ID Q9SI62
description Polyprenol reductase 2 OS=Arabidopsis thaliana GN=At2g16530 PE=1 SV=2
trembl
ID A0A0B0PYA5
description Uncharacterized protein OS=Gossypium arboreum GN=F383_01577 PE=3 SV=1
Gene Ontology
ID GO:0005737
description polyprenol reductase 2-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59677: 48176-52971 , PASA_asmbl_59678: 52011-54705 , PASA_asmbl_59679: 52011-52971 , PASA_asmbl_59680: 55107-57987
cDNA
(Sanger)
(ID:Location)		 012_M04.ab1: 55107-57804 , 047_B03.ab1: 55107-57840

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008246_060 0.0 - - hypothetical protein F383_01577 [Gossypium arboreum]
2 Hb_004627_040 0.0706506915 - - hypothetical protein POPTR_0010s22770g [Populus trichocarpa]
3 Hb_006618_120 0.0724074918 - - PREDICTED: uncharacterized protein LOC105645969 [Jatropha curcas]
4 Hb_003057_060 0.0754076082 - - conserved hypothetical protein [Ricinus communis]
5 Hb_024439_010 0.0824227305 - - PREDICTED: LAG1 longevity assurance homolog 2 [Jatropha curcas]
6 Hb_013575_010 0.0836863345 - - Hepatocyte growth factor-regulated tyrosine kinase substrate, putative [Ricinus communis]
7 Hb_001511_060 0.0837751684 - - PREDICTED: sorting and assembly machinery component 50 homolog [Jatropha curcas]
8 Hb_000288_030 0.0848124088 - - PREDICTED: syntaxin-32 [Jatropha curcas]
9 Hb_000260_350 0.0851158603 - - conserved hypothetical protein [Ricinus communis]
10 Hb_004078_040 0.0857096637 - - PREDICTED: alkylated DNA repair protein alkB homolog 8 [Jatropha curcas]
11 Hb_000345_310 0.0871901188 - - PREDICTED: sucrose nonfermenting 4-like protein isoform X3 [Jatropha curcas]
12 Hb_001912_110 0.0880454556 - - PREDICTED: protoheme IX farnesyltransferase, mitochondrial isoform X1 [Jatropha curcas]
13 Hb_010931_130 0.0880751126 - - PREDICTED: mitogen-activated protein kinase 20 [Jatropha curcas]
14 Hb_001427_160 0.0885605829 - - o-methyltransferase, putative [Ricinus communis]
15 Hb_008494_100 0.0889123344 - - PREDICTED: protein RMD5 homolog A-like [Jatropha curcas]
16 Hb_004109_220 0.0901303403 - - PREDICTED: polyadenylate-binding protein-interacting protein 9-like [Populus euphratica]
17 Hb_004696_080 0.0901817758 - - PREDICTED: uncharacterized protein At1g01500-like [Populus euphratica]
18 Hb_002641_060 0.0903732298 - - prefoldin subunit, putative [Ricinus communis]
19 Hb_027380_220 0.0904559945 - - PREDICTED: probable beta-1,3-galactosyltransferase 20 [Jatropha curcas]
20 Hb_002681_100 0.0906482492 - - PREDICTED: glucuronokinase 1 [Jatropha curcas]

Gene co-expression network

sample Hb_008246_060 Hb_008246_060 Hb_004627_040 Hb_004627_040 Hb_008246_060--Hb_004627_040 Hb_006618_120 Hb_006618_120 Hb_008246_060--Hb_006618_120 Hb_003057_060 Hb_003057_060 Hb_008246_060--Hb_003057_060 Hb_024439_010 Hb_024439_010 Hb_008246_060--Hb_024439_010 Hb_013575_010 Hb_013575_010 Hb_008246_060--Hb_013575_010 Hb_001511_060 Hb_001511_060 Hb_008246_060--Hb_001511_060 Hb_004627_040--Hb_006618_120 Hb_004627_040--Hb_013575_010 Hb_030736_020 Hb_030736_020 Hb_004627_040--Hb_030736_020 Hb_000300_630 Hb_000300_630 Hb_004627_040--Hb_000300_630 Hb_004990_010 Hb_004990_010 Hb_004627_040--Hb_004990_010 Hb_006618_120--Hb_000300_630 Hb_002298_030 Hb_002298_030 Hb_006618_120--Hb_002298_030 Hb_006618_120--Hb_013575_010 Hb_000116_270 Hb_000116_270 Hb_006618_120--Hb_000116_270 Hb_003057_060--Hb_013575_010 Hb_002681_100 Hb_002681_100 Hb_003057_060--Hb_002681_100 Hb_000666_100 Hb_000666_100 Hb_003057_060--Hb_000666_100 Hb_000948_230 Hb_000948_230 Hb_003057_060--Hb_000948_230 Hb_161574_020 Hb_161574_020 Hb_003057_060--Hb_161574_020 Hb_003057_060--Hb_004627_040 Hb_000390_300 Hb_000390_300 Hb_024439_010--Hb_000390_300 Hb_017895_040 Hb_017895_040 Hb_024439_010--Hb_017895_040 Hb_004058_030 Hb_004058_030 Hb_024439_010--Hb_004058_030 Hb_004102_110 Hb_004102_110 Hb_024439_010--Hb_004102_110 Hb_005496_140 Hb_005496_140 Hb_024439_010--Hb_005496_140 Hb_004696_080 Hb_004696_080 Hb_024439_010--Hb_004696_080 Hb_002641_060 Hb_002641_060 Hb_013575_010--Hb_002641_060 Hb_000260_350 Hb_000260_350 Hb_013575_010--Hb_000260_350 Hb_000375_350 Hb_000375_350 Hb_013575_010--Hb_000375_350 Hb_013575_010--Hb_000666_100 Hb_013575_010--Hb_002681_100 Hb_001511_060--Hb_000260_350 Hb_168978_010 Hb_168978_010 Hb_001511_060--Hb_168978_010 Hb_022115_020 Hb_022115_020 Hb_001511_060--Hb_022115_020 Hb_000349_260 Hb_000349_260 Hb_001511_060--Hb_000349_260 Hb_000359_060 Hb_000359_060 Hb_001511_060--Hb_000359_060 Hb_003994_230 Hb_003994_230 Hb_001511_060--Hb_003994_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.8095 10.665 14.9509 30.6099 21.3681 13.765
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.3018 26.9961 26.626 14.1102 17.97

CAGE analysis