Hb_004032_030

Information

Type -
Description -
Location Contig4032: 33238-38612
Sequence    

Annotation

kegg
ID pop:POPTR_0019s09640g
description hypothetical protein
nr
ID XP_011008590.1
description PREDICTED: RNA-binding protein 24-like isoform X1 [Populus euphratica]
swissprot
ID Q9M1S3
description Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana GN=ARP1 PE=2 SV=1
trembl
ID U5FH01
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0019s09640g PE=4 SV=1
Gene Ontology
ID GO:0000166
description rna-binding protein 24-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39975: 33268-38623 , PASA_asmbl_39976: 33582-36754 , PASA_asmbl_39977: 33268-38623 , PASA_asmbl_39978: 33306-38503
cDNA
(Sanger)
(ID:Location)		 011_E05.ab1: 33582-35959 , 036_K17.ab1: 33268-36834 , 042_O13.ab1: 33582-35928

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004032_030 0.0 - - PREDICTED: RNA-binding protein 24-like isoform X1 [Populus euphratica]
2 Hb_002298_030 0.0782530605 - - PREDICTED: coenzyme Q-binding protein COQ10 homolog, mitochondrial [Jatropha curcas]
3 Hb_005054_080 0.0826492999 transcription factor TF Family: LIM Pollen-specific protein SF3, putative [Ricinus communis]
4 Hb_005695_120 0.0922592452 - - Pollen-specific protein C13 precursor, putative [Ricinus communis]
5 Hb_000417_100 0.1001563842 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 12-like [Jatropha curcas]
6 Hb_000392_340 0.1006090077 - - PREDICTED: vacuolar protein sorting-associated protein 29 [Jatropha curcas]
7 Hb_003929_270 0.1029389098 - - S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis]
8 Hb_002660_150 0.1033884069 - - PREDICTED: uncharacterized protein LOC105642207 isoform X1 [Jatropha curcas]
9 Hb_019181_030 0.1051580194 - - PREDICTED: LOW QUALITY PROTEIN: conserved oligomeric Golgi complex subunit 6-like [Pyrus x bretschneideri]
10 Hb_000359_090 0.1090787557 - - PREDICTED: persulfide dioxygenase ETHE1 homolog, mitochondrial-like [Malus domestica]
11 Hb_006618_120 0.1122076445 - - PREDICTED: uncharacterized protein LOC105645969 [Jatropha curcas]
12 Hb_000510_300 0.1126662893 - - PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial [Jatropha curcas]
13 Hb_052805_010 0.1132193073 - - hypothetical protein POPTR_0009s03650g [Populus trichocarpa]
14 Hb_000608_050 0.113749625 - - PREDICTED: GDT1-like protein 4 [Jatropha curcas]
15 Hb_013394_050 0.1149098911 - - PREDICTED: somatic embryogenesis receptor kinase 2 [Nicotiana sylvestris]
16 Hb_000127_140 0.116251072 - - transporter-related family protein [Populus trichocarpa]
17 Hb_001951_130 0.1192083425 - - PREDICTED: coatomer subunit zeta-1-like [Jatropha curcas]
18 Hb_000212_450 0.12217071 - - PREDICTED: basic leucine zipper and W2 domain-containing protein 2 [Jatropha curcas]
19 Hb_000849_130 0.1224284939 - - PREDICTED: adrenodoxin-like protein, mitochondrial [Nelumbo nucifera]
20 Hb_003567_030 0.1233172549 - - PREDICTED: nifU-like protein 4, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_004032_030 Hb_004032_030 Hb_002298_030 Hb_002298_030 Hb_004032_030--Hb_002298_030 Hb_005054_080 Hb_005054_080 Hb_004032_030--Hb_005054_080 Hb_005695_120 Hb_005695_120 Hb_004032_030--Hb_005695_120 Hb_000417_100 Hb_000417_100 Hb_004032_030--Hb_000417_100 Hb_000392_340 Hb_000392_340 Hb_004032_030--Hb_000392_340 Hb_003929_270 Hb_003929_270 Hb_004032_030--Hb_003929_270 Hb_006618_120 Hb_006618_120 Hb_002298_030--Hb_006618_120 Hb_002298_030--Hb_005054_080 Hb_002298_030--Hb_005695_120 Hb_154948_040 Hb_154948_040 Hb_002298_030--Hb_154948_040 Hb_000300_630 Hb_000300_630 Hb_002298_030--Hb_000300_630 Hb_005054_080--Hb_000392_340 Hb_005054_080--Hb_005695_120 Hb_000608_050 Hb_000608_050 Hb_005054_080--Hb_000608_050 Hb_005765_050 Hb_005765_050 Hb_005054_080--Hb_005765_050 Hb_052805_010 Hb_052805_010 Hb_005695_120--Hb_052805_010 Hb_005695_120--Hb_003929_270 Hb_000264_110 Hb_000264_110 Hb_005695_120--Hb_000264_110 Hb_111985_110 Hb_111985_110 Hb_000417_100--Hb_111985_110 Hb_000359_090 Hb_000359_090 Hb_000417_100--Hb_000359_090 Hb_000136_100 Hb_000136_100 Hb_000417_100--Hb_000136_100 Hb_021409_080 Hb_021409_080 Hb_000417_100--Hb_021409_080 Hb_000521_130 Hb_000521_130 Hb_000417_100--Hb_000521_130 Hb_002681_200 Hb_002681_200 Hb_000392_340--Hb_002681_200 Hb_001951_130 Hb_001951_130 Hb_000392_340--Hb_001951_130 Hb_000127_140 Hb_000127_140 Hb_000392_340--Hb_000127_140 Hb_180343_010 Hb_180343_010 Hb_000392_340--Hb_180343_010 Hb_000832_190 Hb_000832_190 Hb_000392_340--Hb_000832_190 Hb_002053_140 Hb_002053_140 Hb_003929_270--Hb_002053_140 Hb_086085_020 Hb_086085_020 Hb_003929_270--Hb_086085_020 Hb_000141_080 Hb_000141_080 Hb_003929_270--Hb_000141_080 Hb_000735_110 Hb_000735_110 Hb_003929_270--Hb_000735_110 Hb_030736_020 Hb_030736_020 Hb_003929_270--Hb_030736_020 Hb_003929_270--Hb_006618_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
35.2013 17.5222 38.254 99.1127 16.2153 34.2414
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
50.4093 42.6711 46.5107 26.1977 24.695

CAGE analysis