Hb_000141_080

Information

Type -
Description -
Location Contig141: 98449-101650
Sequence    

Annotation

kegg
ID brp:103827637
description NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial
nr
ID XP_009101407.1
description PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial isoform X1 [Brassica rapa]
swissprot
ID Q9FGK0
description NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial OS=Arabidopsis thaliana GN=At5g47570 PE=2 SV=1
trembl
ID A0A068UNA0
description Coffea canephora DH200=94 genomic scaffold, scaffold_41 OS=Coffea canephora GN=GSCOC_T00030438001 PE=4 SV=1
Gene Ontology
ID GO:0005747
description nadh dehydrogenase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11088: 98356-101848 , PASA_asmbl_11089: 98356-99287 , PASA_asmbl_11090: 99407-99658
cDNA
(Sanger)
(ID:Location)		 008_H01.ab1: 98522-101505 , 028_N13.ab1: 98356-101420

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000141_080 0.0 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial isoform X1 [Brassica rapa]
2 Hb_002053_140 0.0639843031 - - PREDICTED: coatomer subunit epsilon-1 [Jatropha curcas]
3 Hb_030736_020 0.0708844955 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001366_370 0.0737155928 - - PREDICTED: aarF domain-containing protein kinase 4 isoform X1 [Jatropha curcas]
5 Hb_009787_030 0.0759146787 - - Prolactin regulatory element-binding protein, putative [Ricinus communis]
6 Hb_000735_110 0.0771631325 - - fk506-binding protein, putative [Ricinus communis]
7 Hb_001427_160 0.0774048113 - - o-methyltransferase, putative [Ricinus communis]
8 Hb_086085_020 0.0796477007 - - Non-imprinted in Prader-Willi/Angelman syndrome region protein isoform 3 [Theobroma cacao]
9 Hb_003929_270 0.0802695686 - - S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis]
10 Hb_002289_080 0.0834856617 - - hypothetical protein POPTR_0016s05590g [Populus trichocarpa]
11 Hb_026198_070 0.0877418131 - - PREDICTED: uncharacterized membrane protein At4g09580 [Jatropha curcas]
12 Hb_009328_020 0.0884165521 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000768_210 0.0887614623 - - PREDICTED: uncharacterized protein LOC105632522 [Jatropha curcas]
14 Hb_004627_040 0.0894044944 - - hypothetical protein POPTR_0010s22770g [Populus trichocarpa]
15 Hb_001633_130 0.0894345922 - - PREDICTED: uncharacterized protein LOC105630200 [Jatropha curcas]
16 Hb_006618_120 0.0900724024 - - PREDICTED: uncharacterized protein LOC105645969 [Jatropha curcas]
17 Hb_002518_210 0.0905218983 - - PREDICTED: mitochondrial uncoupling protein 2 [Jatropha curcas]
18 Hb_000200_020 0.0906286418 - - PREDICTED: uncharacterized protein LOC105636907 [Jatropha curcas]
19 Hb_000159_090 0.0908885649 - - hypothetical protein POPTR_0015s153201g, partial [Populus trichocarpa]
20 Hb_000994_120 0.0923696726 - - unknown [Populus trichocarpa]

Gene co-expression network

sample Hb_000141_080 Hb_000141_080 Hb_002053_140 Hb_002053_140 Hb_000141_080--Hb_002053_140 Hb_030736_020 Hb_030736_020 Hb_000141_080--Hb_030736_020 Hb_001366_370 Hb_001366_370 Hb_000141_080--Hb_001366_370 Hb_009787_030 Hb_009787_030 Hb_000141_080--Hb_009787_030 Hb_000735_110 Hb_000735_110 Hb_000141_080--Hb_000735_110 Hb_001427_160 Hb_001427_160 Hb_000141_080--Hb_001427_160 Hb_002053_140--Hb_030736_020 Hb_002053_140--Hb_001427_160 Hb_003929_270 Hb_003929_270 Hb_002053_140--Hb_003929_270 Hb_002053_140--Hb_001366_370 Hb_012796_020 Hb_012796_020 Hb_002053_140--Hb_012796_020 Hb_004627_040 Hb_004627_040 Hb_030736_020--Hb_004627_040 Hb_030736_020--Hb_001427_160 Hb_030736_020--Hb_012796_020 Hb_001232_190 Hb_001232_190 Hb_030736_020--Hb_001232_190 Hb_000200_020 Hb_000200_020 Hb_001366_370--Hb_000200_020 Hb_000783_010 Hb_000783_010 Hb_001366_370--Hb_000783_010 Hb_001366_370--Hb_001427_160 Hb_001366_370--Hb_009787_030 Hb_000510_300 Hb_000510_300 Hb_001366_370--Hb_000510_300 Hb_009787_030--Hb_001427_160 Hb_011344_120 Hb_011344_120 Hb_009787_030--Hb_011344_120 Hb_000115_150 Hb_000115_150 Hb_009787_030--Hb_000115_150 Hb_009787_030--Hb_002053_140 Hb_000735_110--Hb_003929_270 Hb_000392_190 Hb_000392_190 Hb_000735_110--Hb_000392_190 Hb_001250_060 Hb_001250_060 Hb_000735_110--Hb_001250_060 Hb_086085_020 Hb_086085_020 Hb_000735_110--Hb_086085_020 Hb_000735_110--Hb_002053_140 Hb_001427_160--Hb_000510_300 Hb_003994_230 Hb_003994_230 Hb_001427_160--Hb_003994_230 Hb_001703_060 Hb_001703_060 Hb_001427_160--Hb_001703_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
27.8469 15.9114 35.3163 76.2223 40.7399 52.7908
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
57.4724 46.3876 45.6213 36.2543 38.8999

CAGE analysis