Hb_003929_270

Information

Type -
Description -
Location Contig3929: 176737-179536
Sequence    

Annotation

kegg
ID rcu:RCOM_1002920
description S-adenosylmethionine-dependent methyltransferase, putative
nr
ID XP_002519302.1
description S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis]
swissprot
ID O60344
description Endothelin-converting enzyme 2 OS=Homo sapiens GN=ECE2 PE=1 SV=4
trembl
ID B9RZY3
description S-adenosylmethionine-dependent methyltransferase, putative OS=Ricinus communis GN=RCOM_1002920 PE=4 SV=1
Gene Ontology
ID GO:0008168
description methyltransferase-like protein 13

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39389: 176855-179393 , PASA_asmbl_39391: 178266-178557
cDNA
(Sanger)
(ID:Location)		 023_H06.ab1: 176864-178597 , 027_C12r.ab1: 173158-175940

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003929_270 0.0 - - S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis]
2 Hb_002053_140 0.0681475936 - - PREDICTED: coatomer subunit epsilon-1 [Jatropha curcas]
3 Hb_086085_020 0.0794634478 - - Non-imprinted in Prader-Willi/Angelman syndrome region protein isoform 3 [Theobroma cacao]
4 Hb_000141_080 0.0802695686 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial isoform X1 [Brassica rapa]
5 Hb_000735_110 0.0901632765 - - fk506-binding protein, putative [Ricinus communis]
6 Hb_030736_020 0.0914897456 - - conserved hypothetical protein [Ricinus communis]
7 Hb_006618_120 0.0916064635 - - PREDICTED: uncharacterized protein LOC105645969 [Jatropha curcas]
8 Hb_001250_060 0.0920556083 - - PREDICTED: signal recognition particle receptor subunit beta-like [Jatropha curcas]
9 Hb_000264_110 0.0930701142 - - PREDICTED: trafficking protein particle complex subunit 13 [Jatropha curcas]
10 Hb_005695_120 0.0932272809 - - Pollen-specific protein C13 precursor, putative [Ricinus communis]
11 Hb_012796_020 0.0953956271 - - PREDICTED: ADP-ribosylation factor 1 [Prunus mume]
12 Hb_001366_370 0.096923198 - - PREDICTED: aarF domain-containing protein kinase 4 isoform X1 [Jatropha curcas]
13 Hb_000768_210 0.0970429385 - - PREDICTED: uncharacterized protein LOC105632522 [Jatropha curcas]
14 Hb_002518_210 0.0971551697 - - PREDICTED: mitochondrial uncoupling protein 2 [Jatropha curcas]
15 Hb_001699_100 0.0996544272 - - PREDICTED: calmodulin-lysine N-methyltransferase [Jatropha curcas]
16 Hb_002298_030 0.1007011116 - - PREDICTED: coenzyme Q-binding protein COQ10 homolog, mitochondrial [Jatropha curcas]
17 Hb_002150_040 0.1008907704 - - PREDICTED: CMP-sialic acid transporter 1 isoform X3 [Jatropha curcas]
18 Hb_000300_630 0.1010818081 - - PREDICTED: 5'-adenylylsulfate reductase-like 7 [Jatropha curcas]
19 Hb_004032_030 0.1029389098 - - PREDICTED: RNA-binding protein 24-like isoform X1 [Populus euphratica]
20 Hb_009787_030 0.1030823658 - - Prolactin regulatory element-binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_003929_270 Hb_003929_270 Hb_002053_140 Hb_002053_140 Hb_003929_270--Hb_002053_140 Hb_086085_020 Hb_086085_020 Hb_003929_270--Hb_086085_020 Hb_000141_080 Hb_000141_080 Hb_003929_270--Hb_000141_080 Hb_000735_110 Hb_000735_110 Hb_003929_270--Hb_000735_110 Hb_030736_020 Hb_030736_020 Hb_003929_270--Hb_030736_020 Hb_006618_120 Hb_006618_120 Hb_003929_270--Hb_006618_120 Hb_002053_140--Hb_030736_020 Hb_001427_160 Hb_001427_160 Hb_002053_140--Hb_001427_160 Hb_002053_140--Hb_000141_080 Hb_001366_370 Hb_001366_370 Hb_002053_140--Hb_001366_370 Hb_012796_020 Hb_012796_020 Hb_002053_140--Hb_012796_020 Hb_000310_090 Hb_000310_090 Hb_086085_020--Hb_000310_090 Hb_086085_020--Hb_000141_080 Hb_008970_030 Hb_008970_030 Hb_086085_020--Hb_008970_030 Hb_002289_080 Hb_002289_080 Hb_086085_020--Hb_002289_080 Hb_000768_210 Hb_000768_210 Hb_086085_020--Hb_000768_210 Hb_000141_080--Hb_030736_020 Hb_000141_080--Hb_001366_370 Hb_009787_030 Hb_009787_030 Hb_000141_080--Hb_009787_030 Hb_000141_080--Hb_000735_110 Hb_000141_080--Hb_001427_160 Hb_000392_190 Hb_000392_190 Hb_000735_110--Hb_000392_190 Hb_001250_060 Hb_001250_060 Hb_000735_110--Hb_001250_060 Hb_000735_110--Hb_086085_020 Hb_000735_110--Hb_002053_140 Hb_004627_040 Hb_004627_040 Hb_030736_020--Hb_004627_040 Hb_030736_020--Hb_001427_160 Hb_030736_020--Hb_012796_020 Hb_001232_190 Hb_001232_190 Hb_030736_020--Hb_001232_190 Hb_000300_630 Hb_000300_630 Hb_006618_120--Hb_000300_630 Hb_002298_030 Hb_002298_030 Hb_006618_120--Hb_002298_030 Hb_006618_120--Hb_004627_040 Hb_008246_060 Hb_008246_060 Hb_006618_120--Hb_008246_060 Hb_013575_010 Hb_013575_010 Hb_006618_120--Hb_013575_010 Hb_000116_270 Hb_000116_270 Hb_006618_120--Hb_000116_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.2865 3.29434 10.21 30.6858 9.92146 15.134
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.045 14.6999 13.0276 12.2581 9.50773

CAGE analysis