Hb_002053_140

Information

Type -
Description -
Location Contig2053: 149942-160376
Sequence    

Annotation

kegg
ID tcc:TCM_026982
description Coatomer epsilon subunit isoform 1
nr
ID XP_012075535.1
description PREDICTED: coatomer subunit epsilon-1 [Jatropha curcas]
swissprot
ID Q9SA78
description Coatomer subunit epsilon-1 OS=Arabidopsis thaliana GN=At1g30630 PE=2 SV=1
trembl
ID A0A067KFG2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09150 PE=4 SV=1
Gene Ontology
ID GO:0005774
description coatomer subunit epsilon-1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002053_140 0.0 - - PREDICTED: coatomer subunit epsilon-1 [Jatropha curcas]
2 Hb_030736_020 0.0497028976 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001427_160 0.063800746 - - o-methyltransferase, putative [Ricinus communis]
4 Hb_000141_080 0.0639843031 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial isoform X1 [Brassica rapa]
5 Hb_003929_270 0.0681475936 - - S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis]
6 Hb_001366_370 0.0683225454 - - PREDICTED: aarF domain-containing protein kinase 4 isoform X1 [Jatropha curcas]
7 Hb_012796_020 0.0751982643 - - PREDICTED: ADP-ribosylation factor 1 [Prunus mume]
8 Hb_000453_160 0.0758370723 - - vacuolar protein sorting 26, vps26, putative [Ricinus communis]
9 Hb_000768_210 0.0820475194 - - PREDICTED: uncharacterized protein LOC105632522 [Jatropha curcas]
10 Hb_004627_040 0.083579288 - - hypothetical protein POPTR_0010s22770g [Populus trichocarpa]
11 Hb_006618_120 0.0837362394 - - PREDICTED: uncharacterized protein LOC105645969 [Jatropha curcas]
12 Hb_009787_030 0.0846874739 - - Prolactin regulatory element-binding protein, putative [Ricinus communis]
13 Hb_001699_100 0.0850859623 - - PREDICTED: calmodulin-lysine N-methyltransferase [Jatropha curcas]
14 Hb_172632_100 0.0862457809 - - PREDICTED: reticulon-like protein B22 [Jatropha curcas]
15 Hb_003994_230 0.086990678 - - 7-dehydrocholesterol reductase, putative [Ricinus communis]
16 Hb_001318_280 0.0894679135 - - Protein FAM18B, putative [Ricinus communis]
17 Hb_001633_130 0.0902659517 - - PREDICTED: uncharacterized protein LOC105630200 [Jatropha curcas]
18 Hb_000510_300 0.0906052489 - - PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial [Jatropha curcas]
19 Hb_001232_190 0.0937282555 - - PREDICTED: uncharacterized protein LOC105639761 isoform X2 [Jatropha curcas]
20 Hb_002641_060 0.0937366118 - - prefoldin subunit, putative [Ricinus communis]

Gene co-expression network

sample Hb_002053_140 Hb_002053_140 Hb_030736_020 Hb_030736_020 Hb_002053_140--Hb_030736_020 Hb_001427_160 Hb_001427_160 Hb_002053_140--Hb_001427_160 Hb_000141_080 Hb_000141_080 Hb_002053_140--Hb_000141_080 Hb_003929_270 Hb_003929_270 Hb_002053_140--Hb_003929_270 Hb_001366_370 Hb_001366_370 Hb_002053_140--Hb_001366_370 Hb_012796_020 Hb_012796_020 Hb_002053_140--Hb_012796_020 Hb_004627_040 Hb_004627_040 Hb_030736_020--Hb_004627_040 Hb_030736_020--Hb_000141_080 Hb_030736_020--Hb_001427_160 Hb_030736_020--Hb_012796_020 Hb_001232_190 Hb_001232_190 Hb_030736_020--Hb_001232_190 Hb_009787_030 Hb_009787_030 Hb_001427_160--Hb_009787_030 Hb_000510_300 Hb_000510_300 Hb_001427_160--Hb_000510_300 Hb_003994_230 Hb_003994_230 Hb_001427_160--Hb_003994_230 Hb_001427_160--Hb_001366_370 Hb_001703_060 Hb_001703_060 Hb_001427_160--Hb_001703_060 Hb_000141_080--Hb_001366_370 Hb_000141_080--Hb_009787_030 Hb_000735_110 Hb_000735_110 Hb_000141_080--Hb_000735_110 Hb_000141_080--Hb_001427_160 Hb_086085_020 Hb_086085_020 Hb_003929_270--Hb_086085_020 Hb_003929_270--Hb_000141_080 Hb_003929_270--Hb_000735_110 Hb_003929_270--Hb_030736_020 Hb_006618_120 Hb_006618_120 Hb_003929_270--Hb_006618_120 Hb_000200_020 Hb_000200_020 Hb_001366_370--Hb_000200_020 Hb_000783_010 Hb_000783_010 Hb_001366_370--Hb_000783_010 Hb_001366_370--Hb_009787_030 Hb_001366_370--Hb_000510_300 Hb_001699_100 Hb_001699_100 Hb_012796_020--Hb_001699_100 Hb_012796_020--Hb_006618_120 Hb_012796_020--Hb_003929_270 Hb_001124_020 Hb_001124_020 Hb_012796_020--Hb_001124_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.5655 7.97461 18.7532 40.522 22.17 23.6749
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
24.1967 26.6731 18.8878 19.6015 14.0516

CAGE analysis