Hb_001124_020

Information

Type -
Description -
Location Contig1124: 19461-20619
Sequence    

Annotation

kegg
ID rcu:RCOM_1312950
description fad NAD binding oxidoreductases, putative
nr
ID XP_012086645.1
description PREDICTED: protein yippee-like At4g27745 [Jatropha curcas]
swissprot
ID Q9T096
description Protein yippee-like At4g27745 OS=Arabidopsis thaliana GN=At4g27745 PE=3 SV=2
trembl
ID A0A067K0E3
description Protein yippee-like OS=Jatropha curcas GN=JCGZ_20390 PE=3 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03788: 19524-21072 , PASA_asmbl_03789: 19562-21072
cDNA
(Sanger)
(ID:Location)		 013_F05.ab1: 19560-21072 , 014_J10.ab1: 19576-21072 , 032_J10.ab1: 19649-21072 , 050_O19.ab1: 19645-21071

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001124_020 0.0 - - PREDICTED: protein yippee-like At4g27745 [Jatropha curcas]
2 Hb_012796_020 0.0971026147 - - PREDICTED: ADP-ribosylation factor 1 [Prunus mume]
3 Hb_082821_010 0.1012187302 - - PREDICTED: dephospho-CoA kinase-like [Jatropha curcas]
4 Hb_001699_100 0.1013288643 - - PREDICTED: calmodulin-lysine N-methyltransferase [Jatropha curcas]
5 Hb_001633_130 0.1087399768 - - PREDICTED: uncharacterized protein LOC105630200 [Jatropha curcas]
6 Hb_001575_070 0.1088491038 - - PREDICTED: uncharacterized protein LOC105639885 [Jatropha curcas]
7 Hb_004466_040 0.1118396342 - - PREDICTED: protein RER1B-like [Gossypium raimondii]
8 Hb_000453_160 0.1128574935 - - vacuolar protein sorting 26, vps26, putative [Ricinus communis]
9 Hb_000146_050 0.1131467271 - - PREDICTED: protein unc-50 homolog isoform X2 [Gossypium raimondii]
10 Hb_012322_020 0.1156232126 - - -
11 Hb_002232_100 0.1161516556 - - vacuolar ATPase F subunit [Hevea brasiliensis]
12 Hb_090051_030 0.1173514879 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Jatropha curcas]
13 Hb_001935_130 0.1176311608 - - PREDICTED: uncharacterized protein LOC105643176 [Jatropha curcas]
14 Hb_030736_020 0.1176738934 - - conserved hypothetical protein [Ricinus communis]
15 Hb_002375_040 0.1218254721 - - PREDICTED: 15 kDa selenoprotein [Jatropha curcas]
16 Hb_007441_190 0.1232587516 - - hypothetical protein CISIN_1g023046mg [Citrus sinensis]
17 Hb_000594_050 0.1243865159 - - PREDICTED: pH-response regulator protein palA/RIM20 isoform X1 [Jatropha curcas]
18 Hb_002053_140 0.1245148706 - - PREDICTED: coatomer subunit epsilon-1 [Jatropha curcas]
19 Hb_004718_040 0.1253748373 - - PREDICTED: uncharacterized protein LOC105638292 [Jatropha curcas]
20 Hb_003536_110 0.1255006983 - - PREDICTED: probable small nuclear ribonucleoprotein F [Jatropha curcas]

Gene co-expression network

sample Hb_001124_020 Hb_001124_020 Hb_012796_020 Hb_012796_020 Hb_001124_020--Hb_012796_020 Hb_082821_010 Hb_082821_010 Hb_001124_020--Hb_082821_010 Hb_001699_100 Hb_001699_100 Hb_001124_020--Hb_001699_100 Hb_001633_130 Hb_001633_130 Hb_001124_020--Hb_001633_130 Hb_001575_070 Hb_001575_070 Hb_001124_020--Hb_001575_070 Hb_004466_040 Hb_004466_040 Hb_001124_020--Hb_004466_040 Hb_030736_020 Hb_030736_020 Hb_012796_020--Hb_030736_020 Hb_002053_140 Hb_002053_140 Hb_012796_020--Hb_002053_140 Hb_012796_020--Hb_001699_100 Hb_006618_120 Hb_006618_120 Hb_012796_020--Hb_006618_120 Hb_003929_270 Hb_003929_270 Hb_012796_020--Hb_003929_270 Hb_082821_010--Hb_001633_130 Hb_090051_030 Hb_090051_030 Hb_082821_010--Hb_090051_030 Hb_006455_120 Hb_006455_120 Hb_082821_010--Hb_006455_120 Hb_007904_200 Hb_007904_200 Hb_082821_010--Hb_007904_200 Hb_002863_050 Hb_002863_050 Hb_082821_010--Hb_002863_050 Hb_002235_250 Hb_002235_250 Hb_082821_010--Hb_002235_250 Hb_000453_160 Hb_000453_160 Hb_001699_100--Hb_000453_160 Hb_001699_100--Hb_002053_140 Hb_000300_630 Hb_000300_630 Hb_001699_100--Hb_000300_630 Hb_000025_630 Hb_000025_630 Hb_001699_100--Hb_000025_630 Hb_007441_190 Hb_007441_190 Hb_001699_100--Hb_007441_190 Hb_001633_130--Hb_090051_030 Hb_000146_050 Hb_000146_050 Hb_001633_130--Hb_000146_050 Hb_001633_130--Hb_006455_120 Hb_001159_130 Hb_001159_130 Hb_001633_130--Hb_001159_130 Hb_003177_030 Hb_003177_030 Hb_001633_130--Hb_003177_030 Hb_024847_010 Hb_024847_010 Hb_001575_070--Hb_024847_010 Hb_004060_020 Hb_004060_020 Hb_001575_070--Hb_004060_020 Hb_001252_130 Hb_001252_130 Hb_001575_070--Hb_001252_130 Hb_009694_010 Hb_009694_010 Hb_001575_070--Hb_009694_010 Hb_001205_310 Hb_001205_310 Hb_001575_070--Hb_001205_310 Hb_001575_070--Hb_082821_010 Hb_012322_020 Hb_012322_020 Hb_004466_040--Hb_012322_020 Hb_086022_010 Hb_086022_010 Hb_004466_040--Hb_086022_010 Hb_000103_310 Hb_000103_310 Hb_004466_040--Hb_000103_310 Hb_000608_110 Hb_000608_110 Hb_004466_040--Hb_000608_110 Hb_000696_010 Hb_000696_010 Hb_004466_040--Hb_000696_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
32.0775 12.9102 35.2018 61.8104 40.4336 51.3129
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
22.1826 43.4679 25.6083 13.0199 19.2597

CAGE analysis