Hb_001575_070

Information

Type -
Description -
Location Contig1575: 126891-135294
Sequence    

Annotation

kegg
ID pop:POPTR_0010s15290g
description POPTRDRAFT_822201; haloacid dehalogenase-like hydrolase family protein
nr
ID XP_012079463.1
description PREDICTED: uncharacterized protein LOC105639885 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LM09
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17422 PE=4 SV=1
Gene Ontology
ID GO:0016787
description haloacid dehalogenase-like hydrolase family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13752: 126921-127028 , PASA_asmbl_13753: 127033-130116 , PASA_asmbl_13754: 130323-135390
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001575_070 0.0 - - PREDICTED: uncharacterized protein LOC105639885 [Jatropha curcas]
2 Hb_024847_010 0.0893501527 - - UPF0586 C9orf41-like protein [Medicago truncatula]
3 Hb_004060_020 0.0904440241 - - nucleic acid binding protein, putative [Ricinus communis]
4 Hb_001252_130 0.0980520856 - - PREDICTED: protein YIPF1 homolog [Jatropha curcas]
5 Hb_009694_010 0.0997052583 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001205_310 0.1056489577 - - PREDICTED: TPR repeat-containing thioredoxin TTL4-like [Jatropha curcas]
7 Hb_082821_010 0.1077494599 - - PREDICTED: dephospho-CoA kinase-like [Jatropha curcas]
8 Hb_001124_020 0.1088491038 - - PREDICTED: protein yippee-like At4g27745 [Jatropha curcas]
9 Hb_000453_160 0.1098208031 - - vacuolar protein sorting 26, vps26, putative [Ricinus communis]
10 Hb_000054_090 0.1102347871 - - zinc finger protein, putative [Ricinus communis]
11 Hb_000160_060 0.1103385258 - - unknown [Populus trichocarpa]
12 Hb_163950_030 0.1106130082 - - PREDICTED: uncharacterized protein LOC105648509 isoform X1 [Jatropha curcas]
13 Hb_002518_210 0.1107433727 - - PREDICTED: mitochondrial uncoupling protein 2 [Jatropha curcas]
14 Hb_000110_310 0.1111504988 rubber biosynthesis Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 4 of pyruvate dehydrogenase complex Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase, putative [Ricinus communis]
15 Hb_001971_010 0.1127178389 - - F23N19.4 [Arabidopsis thaliana]
16 Hb_054745_010 0.1133412332 - - conserved hypothetical protein [Ricinus communis]
17 Hb_004619_080 0.1133745195 - - hypothetical protein PRUPE_ppa011369mg [Prunus persica]
18 Hb_002235_250 0.113586578 - - PREDICTED: cystathionine gamma-synthase 1, chloroplastic [Jatropha curcas]
19 Hb_005496_140 0.1139409048 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001633_130 0.1140831252 - - PREDICTED: uncharacterized protein LOC105630200 [Jatropha curcas]

Gene co-expression network

sample Hb_001575_070 Hb_001575_070 Hb_024847_010 Hb_024847_010 Hb_001575_070--Hb_024847_010 Hb_004060_020 Hb_004060_020 Hb_001575_070--Hb_004060_020 Hb_001252_130 Hb_001252_130 Hb_001575_070--Hb_001252_130 Hb_009694_010 Hb_009694_010 Hb_001575_070--Hb_009694_010 Hb_001205_310 Hb_001205_310 Hb_001575_070--Hb_001205_310 Hb_082821_010 Hb_082821_010 Hb_001575_070--Hb_082821_010 Hb_006120_070 Hb_006120_070 Hb_024847_010--Hb_006120_070 Hb_003964_070 Hb_003964_070 Hb_024847_010--Hb_003964_070 Hb_001142_030 Hb_001142_030 Hb_024847_010--Hb_001142_030 Hb_002918_030 Hb_002918_030 Hb_024847_010--Hb_002918_030 Hb_001188_070 Hb_001188_070 Hb_024847_010--Hb_001188_070 Hb_003665_060 Hb_003665_060 Hb_024847_010--Hb_003665_060 Hb_001971_010 Hb_001971_010 Hb_004060_020--Hb_001971_010 Hb_163950_030 Hb_163950_030 Hb_004060_020--Hb_163950_030 Hb_005078_010 Hb_005078_010 Hb_004060_020--Hb_005078_010 Hb_002235_250 Hb_002235_250 Hb_004060_020--Hb_002235_250 Hb_004060_020--Hb_009694_010 Hb_005496_140 Hb_005496_140 Hb_001252_130--Hb_005496_140 Hb_000081_160 Hb_000081_160 Hb_001252_130--Hb_000081_160 Hb_001252_130--Hb_001971_010 Hb_000599_250 Hb_000599_250 Hb_001252_130--Hb_000599_250 Hb_000215_110 Hb_000215_110 Hb_001252_130--Hb_000215_110 Hb_000054_090 Hb_000054_090 Hb_001252_130--Hb_000054_090 Hb_028227_020 Hb_028227_020 Hb_009694_010--Hb_028227_020 Hb_000465_090 Hb_000465_090 Hb_009694_010--Hb_000465_090 Hb_004096_090 Hb_004096_090 Hb_009694_010--Hb_004096_090 Hb_001157_020 Hb_001157_020 Hb_009694_010--Hb_001157_020 Hb_007632_030 Hb_007632_030 Hb_009694_010--Hb_007632_030 Hb_005697_060 Hb_005697_060 Hb_009694_010--Hb_005697_060 Hb_002304_150 Hb_002304_150 Hb_001205_310--Hb_002304_150 Hb_001711_020 Hb_001711_020 Hb_001205_310--Hb_001711_020 Hb_001205_310--Hb_002235_250 Hb_013726_020 Hb_013726_020 Hb_001205_310--Hb_013726_020 Hb_000869_020 Hb_000869_020 Hb_001205_310--Hb_000869_020 Hb_001633_130 Hb_001633_130 Hb_082821_010--Hb_001633_130 Hb_090051_030 Hb_090051_030 Hb_082821_010--Hb_090051_030 Hb_006455_120 Hb_006455_120 Hb_082821_010--Hb_006455_120 Hb_007904_200 Hb_007904_200 Hb_082821_010--Hb_007904_200 Hb_002863_050 Hb_002863_050 Hb_082821_010--Hb_002863_050 Hb_082821_010--Hb_002235_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.99827 0.71324 2.60263 3.59095 2.20734 3.94548
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.04713 4.16264 1.95314 1.57878 2.49257

CAGE analysis