Hb_002304_150

Information

Type -
Description -
Location Contig2304: 124092-127585
Sequence    

Annotation

kegg
ID pop:POPTR_0011s07740g
description POPTRDRAFT_822960; hypothetical protein
nr
ID XP_012091725.1
description PREDICTED: protein IQ-DOMAIN 1-like isoform X1 [Jatropha curcas]
swissprot
ID Q8LPG9
description Protein IQ-DOMAIN 14 OS=Arabidopsis thaliana GN=IQD14 PE=1 SV=1
trembl
ID A0A067JB72
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21527 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24223: 123929-127500 , PASA_asmbl_24224: 125042-125848 , PASA_asmbl_24225: 124099-124515
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002304_150 0.0 - - PREDICTED: protein IQ-DOMAIN 1-like isoform X1 [Jatropha curcas]
2 Hb_001799_030 0.0479552068 - - PREDICTED: ELMO domain-containing protein C-like [Jatropha curcas]
3 Hb_012258_010 0.0758516994 - - PREDICTED: cyclase-associated protein 1 [Jatropha curcas]
4 Hb_006132_090 0.078248694 - - PREDICTED: origin of replication complex subunit 5 isoform X1 [Jatropha curcas]
5 Hb_000375_350 0.0783282822 - - PREDICTED: uncharacterized protein LOC105641632 [Jatropha curcas]
6 Hb_000110_310 0.0800075024 rubber biosynthesis Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 4 of pyruvate dehydrogenase complex Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase, putative [Ricinus communis]
7 Hb_003728_060 0.0823979734 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 4-like [Jatropha curcas]
8 Hb_154471_020 0.0847376385 - - squalene synthetase [Euphorbia tirucalli]
9 Hb_000869_020 0.0852529848 - - PREDICTED: uncharacterized protein LOC105641036 [Jatropha curcas]
10 Hb_171376_010 0.0884820413 - - PREDICTED: uncharacterized protein LOC105630877 isoform X1 [Jatropha curcas]
11 Hb_001711_020 0.0884951097 - - PREDICTED: AP-2 complex subunit mu [Jatropha curcas]
12 Hb_002157_120 0.090282693 - - conserved hypothetical protein [Ricinus communis]
13 Hb_004162_130 0.0910866855 - - conserved hypothetical protein [Ricinus communis]
14 Hb_003861_060 0.0925856407 - - PREDICTED: treacle protein [Jatropha curcas]
15 Hb_000270_680 0.0927648543 - - hypothetical protein POPTR_0015s08420g [Populus trichocarpa]
16 Hb_002687_120 0.0936517005 - - PREDICTED: lipoyl synthase, chloroplastic [Jatropha curcas]
17 Hb_000890_130 0.093786758 - - PREDICTED: probable serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit TON2 [Phoenix dactylifera]
18 Hb_001300_150 0.093792563 transcription factor TF Family: TUB PREDICTED: tubby-like F-box protein 3 [Jatropha curcas]
19 Hb_003119_060 0.0947420854 - - PREDICTED: dicarboxylate transporter 2.1, chloroplastic [Jatropha curcas]
20 Hb_002946_190 0.0948976126 - - PREDICTED: nudix hydrolase 26, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_002304_150 Hb_002304_150 Hb_001799_030 Hb_001799_030 Hb_002304_150--Hb_001799_030 Hb_012258_010 Hb_012258_010 Hb_002304_150--Hb_012258_010 Hb_006132_090 Hb_006132_090 Hb_002304_150--Hb_006132_090 Hb_000375_350 Hb_000375_350 Hb_002304_150--Hb_000375_350 Hb_000110_310 Hb_000110_310 Hb_002304_150--Hb_000110_310 Hb_003728_060 Hb_003728_060 Hb_002304_150--Hb_003728_060 Hb_000720_040 Hb_000720_040 Hb_001799_030--Hb_000720_040 Hb_001799_030--Hb_012258_010 Hb_000300_500 Hb_000300_500 Hb_001799_030--Hb_000300_500 Hb_001799_030--Hb_000110_310 Hb_002681_100 Hb_002681_100 Hb_001799_030--Hb_002681_100 Hb_012258_010--Hb_000375_350 Hb_001300_150 Hb_001300_150 Hb_012258_010--Hb_001300_150 Hb_000345_310 Hb_000345_310 Hb_012258_010--Hb_000345_310 Hb_171376_010 Hb_171376_010 Hb_012258_010--Hb_171376_010 Hb_005167_010 Hb_005167_010 Hb_006132_090--Hb_005167_010 Hb_001900_140 Hb_001900_140 Hb_006132_090--Hb_001900_140 Hb_003878_090 Hb_003878_090 Hb_006132_090--Hb_003878_090 Hb_002157_120 Hb_002157_120 Hb_006132_090--Hb_002157_120 Hb_007002_020 Hb_007002_020 Hb_006132_090--Hb_007002_020 Hb_003119_060 Hb_003119_060 Hb_006132_090--Hb_003119_060 Hb_017895_040 Hb_017895_040 Hb_000375_350--Hb_017895_040 Hb_000375_350--Hb_001300_150 Hb_000599_250 Hb_000599_250 Hb_000375_350--Hb_000599_250 Hb_005496_140 Hb_005496_140 Hb_000375_350--Hb_005496_140 Hb_002641_060 Hb_002641_060 Hb_000375_350--Hb_002641_060 Hb_013575_010 Hb_013575_010 Hb_000375_350--Hb_013575_010 Hb_006153_070 Hb_006153_070 Hb_000110_310--Hb_006153_070 Hb_009898_050 Hb_009898_050 Hb_000110_310--Hb_009898_050 Hb_000579_120 Hb_000579_120 Hb_000110_310--Hb_000579_120 Hb_000270_680 Hb_000270_680 Hb_000110_310--Hb_000270_680 Hb_001472_100 Hb_001472_100 Hb_000110_310--Hb_001472_100 Hb_001268_240 Hb_001268_240 Hb_000110_310--Hb_001268_240 Hb_004162_130 Hb_004162_130 Hb_003728_060--Hb_004162_130 Hb_003728_060--Hb_000375_350 Hb_002871_190 Hb_002871_190 Hb_003728_060--Hb_002871_190 Hb_050514_010 Hb_050514_010 Hb_003728_060--Hb_050514_010 Hb_000260_030 Hb_000260_030 Hb_003728_060--Hb_000260_030 Hb_026889_030 Hb_026889_030 Hb_003728_060--Hb_026889_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.7186 7.69828 27.4523 21.1409 9.75541 13.7478
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.1005 17.867 18.6054 12.0059 13.822

CAGE analysis