Hb_171376_010

Information

Type -
Description -
Location Contig171376: 12396-14028
Sequence    

Annotation

kegg
ID rcu:RCOM_1588060
description hypothetical protein
nr
ID XP_012068254.1
description PREDICTED: uncharacterized protein LOC105630877 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KZL8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16053 PE=4 SV=1
Gene Ontology
ID GO:0005622
description syntaxin t-snare family

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16033: 13219-16815
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_171376_010 0.0 - - PREDICTED: uncharacterized protein LOC105630877 isoform X1 [Jatropha curcas]
2 Hb_000375_350 0.0836793314 - - PREDICTED: uncharacterized protein LOC105641632 [Jatropha curcas]
3 Hb_012258_010 0.0879623872 - - PREDICTED: cyclase-associated protein 1 [Jatropha curcas]
4 Hb_002304_150 0.0884820413 - - PREDICTED: protein IQ-DOMAIN 1-like isoform X1 [Jatropha curcas]
5 Hb_000690_160 0.0905492804 - - PREDICTED: uncharacterized protein LOC105121500 [Populus euphratica]
6 Hb_000869_020 0.0918269697 - - PREDICTED: uncharacterized protein LOC105641036 [Jatropha curcas]
7 Hb_003728_060 0.0922647081 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 4-like [Jatropha curcas]
8 Hb_002374_570 0.0973060547 - - PREDICTED: vesicle-associated protein 1-2-like [Jatropha curcas]
9 Hb_154471_020 0.0974095233 - - squalene synthetase [Euphorbia tirucalli]
10 Hb_000053_110 0.0976936373 - - conserved hypothetical protein [Ricinus communis]
11 Hb_006817_010 0.1000918998 - - PREDICTED: serine/threonine-protein kinase CTR1 isoform X1 [Jatropha curcas]
12 Hb_003531_080 0.1004053936 - - PREDICTED: small G protein signaling modulator 2 isoform X1 [Jatropha curcas]
13 Hb_121937_010 0.1012516692 - - hypothetical protein B456_013G261900 [Gossypium raimondii]
14 Hb_010368_010 0.1029623314 - - RNA splicing protein mrs2, mitochondrial, putative [Ricinus communis]
15 Hb_002235_250 0.1036762069 - - PREDICTED: cystathionine gamma-synthase 1, chloroplastic [Jatropha curcas]
16 Hb_002600_090 0.1060403319 - - ATP binding protein, putative [Ricinus communis]
17 Hb_181729_010 0.1063470618 - - PREDICTED: DNA polymerase epsilon subunit 2 isoform X1 [Jatropha curcas]
18 Hb_001136_070 0.1066494569 - - Transmembrane protein TPARL, putative [Ricinus communis]
19 Hb_004162_130 0.1066919724 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001300_150 0.1068582791 transcription factor TF Family: TUB PREDICTED: tubby-like F-box protein 3 [Jatropha curcas]

Gene co-expression network

sample Hb_171376_010 Hb_171376_010 Hb_000375_350 Hb_000375_350 Hb_171376_010--Hb_000375_350 Hb_012258_010 Hb_012258_010 Hb_171376_010--Hb_012258_010 Hb_002304_150 Hb_002304_150 Hb_171376_010--Hb_002304_150 Hb_000690_160 Hb_000690_160 Hb_171376_010--Hb_000690_160 Hb_000869_020 Hb_000869_020 Hb_171376_010--Hb_000869_020 Hb_003728_060 Hb_003728_060 Hb_171376_010--Hb_003728_060 Hb_017895_040 Hb_017895_040 Hb_000375_350--Hb_017895_040 Hb_001300_150 Hb_001300_150 Hb_000375_350--Hb_001300_150 Hb_000599_250 Hb_000599_250 Hb_000375_350--Hb_000599_250 Hb_005496_140 Hb_005496_140 Hb_000375_350--Hb_005496_140 Hb_002641_060 Hb_002641_060 Hb_000375_350--Hb_002641_060 Hb_013575_010 Hb_013575_010 Hb_000375_350--Hb_013575_010 Hb_012258_010--Hb_000375_350 Hb_012258_010--Hb_002304_150 Hb_001799_030 Hb_001799_030 Hb_012258_010--Hb_001799_030 Hb_012258_010--Hb_001300_150 Hb_000345_310 Hb_000345_310 Hb_012258_010--Hb_000345_310 Hb_002304_150--Hb_001799_030 Hb_006132_090 Hb_006132_090 Hb_002304_150--Hb_006132_090 Hb_002304_150--Hb_000375_350 Hb_000110_310 Hb_000110_310 Hb_002304_150--Hb_000110_310 Hb_002304_150--Hb_003728_060 Hb_000866_010 Hb_000866_010 Hb_000690_160--Hb_000866_010 Hb_000753_240 Hb_000753_240 Hb_000690_160--Hb_000753_240 Hb_075751_010 Hb_075751_010 Hb_000690_160--Hb_075751_010 Hb_006817_010 Hb_006817_010 Hb_000690_160--Hb_006817_010 Hb_004440_020 Hb_004440_020 Hb_000690_160--Hb_004440_020 Hb_000768_170 Hb_000768_170 Hb_000690_160--Hb_000768_170 Hb_003513_010 Hb_003513_010 Hb_000869_020--Hb_003513_010 Hb_004970_190 Hb_004970_190 Hb_000869_020--Hb_004970_190 Hb_004052_080 Hb_004052_080 Hb_000869_020--Hb_004052_080 Hb_003861_060 Hb_003861_060 Hb_000869_020--Hb_003861_060 Hb_007007_120 Hb_007007_120 Hb_000869_020--Hb_007007_120 Hb_005588_080 Hb_005588_080 Hb_000869_020--Hb_005588_080 Hb_004162_130 Hb_004162_130 Hb_003728_060--Hb_004162_130 Hb_003728_060--Hb_000375_350 Hb_002871_190 Hb_002871_190 Hb_003728_060--Hb_002871_190 Hb_050514_010 Hb_050514_010 Hb_003728_060--Hb_050514_010 Hb_000260_030 Hb_000260_030 Hb_003728_060--Hb_000260_030 Hb_026889_030 Hb_026889_030 Hb_003728_060--Hb_026889_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.1108 9.04832 19.4454 16.5258 7.93826 10.8192
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.7345 15.6383 16.8875 5.48608 12.525

CAGE analysis