Hb_000608_110

Information

Type -
Description -
Location Contig608: 46650-49209
Sequence    

Annotation

kegg
ID rcu:RCOM_1078560
description Tyrosine-protein phosphatase SIW14, putative
nr
ID XP_012085756.1
description PREDICTED: probable tyrosine-protein phosphatase At1g05000 [Jatropha curcas]
swissprot
ID Q9ZVN4
description Probable tyrosine-protein phosphatase At1g05000 OS=Arabidopsis thaliana GN=At1g05000 PE=1 SV=1
trembl
ID A0A067K3N3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18023 PE=4 SV=1
Gene Ontology
ID GO:0004725
description probable tyrosine-protein phosphatase at1g05000

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000608_110 0.0 - - PREDICTED: probable tyrosine-protein phosphatase At1g05000 [Jatropha curcas]
2 Hb_001501_080 0.0912073738 - - PREDICTED: uncharacterized protein LOC105640832 isoform X1 [Jatropha curcas]
3 Hb_000751_030 0.0993411198 - - Vesicle transport protein GOT1B, putative [Ricinus communis]
4 Hb_000494_080 0.0996409245 - - Palmitoyl-protein thioesterase 1 precursor, putative [Ricinus communis]
5 Hb_007951_040 0.1022031157 - - signal peptidase family protein [Populus trichocarpa]
6 Hb_000760_020 0.1025232881 - - PREDICTED: E3 ubiquitin-protein ligase RNF185-like isoform X1 [Jatropha curcas]
7 Hb_000096_120 0.1047090325 - - PREDICTED: uncharacterized protein LOC105639993 [Jatropha curcas]
8 Hb_000637_140 0.1055530089 - - PREDICTED: actin-related protein 4-like [Jatropha curcas]
9 Hb_003038_120 0.1068876089 - - rer1 protein, putative [Ricinus communis]
10 Hb_000635_040 0.1069841396 - - PREDICTED: nuclear pore complex protein NUP54 [Jatropha curcas]
11 Hb_002876_320 0.1088995421 - - PREDICTED: uncharacterized protein LOC105632052 [Jatropha curcas]
12 Hb_004466_040 0.1097121576 - - PREDICTED: protein RER1B-like [Gossypium raimondii]
13 Hb_162060_010 0.1118835777 - - conserved hypothetical protein [Ricinus communis]
14 Hb_003760_030 0.1123411142 - - PREDICTED: novel plant SNARE 13 [Jatropha curcas]
15 Hb_000008_220 0.1127717964 transcription factor TF Family: ARF PREDICTED: auxin response factor 10 [Jatropha curcas]
16 Hb_086022_010 0.113977866 - - PREDICTED: succinate dehydrogenase assembly factor 1 homolog, mitochondrial [Nicotiana tomentosiformis]
17 Hb_006588_070 0.1143794977 - - 20 kD nuclear cap binding protein, putative [Ricinus communis]
18 Hb_002235_210 0.1150646093 - - PREDICTED: vesicle transport v-SNARE 13-like [Populus euphratica]
19 Hb_010053_040 0.1154015232 - - PREDICTED: ras-related protein Rab11D [Jatropha curcas]
20 Hb_000392_230 0.1158588484 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000608_110 Hb_000608_110 Hb_001501_080 Hb_001501_080 Hb_000608_110--Hb_001501_080 Hb_000751_030 Hb_000751_030 Hb_000608_110--Hb_000751_030 Hb_000494_080 Hb_000494_080 Hb_000608_110--Hb_000494_080 Hb_007951_040 Hb_007951_040 Hb_000608_110--Hb_007951_040 Hb_000760_020 Hb_000760_020 Hb_000608_110--Hb_000760_020 Hb_000096_120 Hb_000096_120 Hb_000608_110--Hb_000096_120 Hb_001501_080--Hb_000751_030 Hb_002054_050 Hb_002054_050 Hb_001501_080--Hb_002054_050 Hb_005463_130 Hb_005463_130 Hb_001501_080--Hb_005463_130 Hb_000392_230 Hb_000392_230 Hb_001501_080--Hb_000392_230 Hb_007007_040 Hb_007007_040 Hb_001501_080--Hb_007007_040 Hb_003760_030 Hb_003760_030 Hb_001501_080--Hb_003760_030 Hb_000751_030--Hb_000392_230 Hb_000751_030--Hb_007007_040 Hb_000776_100 Hb_000776_100 Hb_000751_030--Hb_000776_100 Hb_011618_050 Hb_011618_050 Hb_000751_030--Hb_011618_050 Hb_000414_050 Hb_000414_050 Hb_000751_030--Hb_000414_050 Hb_000635_040 Hb_000635_040 Hb_000494_080--Hb_000635_040 Hb_003929_170 Hb_003929_170 Hb_000494_080--Hb_003929_170 Hb_005895_010 Hb_005895_010 Hb_000494_080--Hb_005895_010 Hb_001087_030 Hb_001087_030 Hb_000494_080--Hb_001087_030 Hb_002876_320 Hb_002876_320 Hb_000494_080--Hb_002876_320 Hb_002965_040 Hb_002965_040 Hb_000494_080--Hb_002965_040 Hb_002836_140 Hb_002836_140 Hb_007951_040--Hb_002836_140 Hb_002783_170 Hb_002783_170 Hb_007951_040--Hb_002783_170 Hb_007951_040--Hb_000776_100 Hb_003688_090 Hb_003688_090 Hb_007951_040--Hb_003688_090 Hb_003038_120 Hb_003038_120 Hb_007951_040--Hb_003038_120 Hb_000915_080 Hb_000915_080 Hb_007951_040--Hb_000915_080 Hb_014361_150 Hb_014361_150 Hb_000760_020--Hb_014361_150 Hb_001077_030 Hb_001077_030 Hb_000760_020--Hb_001077_030 Hb_000525_100 Hb_000525_100 Hb_000760_020--Hb_000525_100 Hb_144166_010 Hb_144166_010 Hb_000760_020--Hb_144166_010 Hb_000291_060 Hb_000291_060 Hb_000760_020--Hb_000291_060 Hb_003096_060 Hb_003096_060 Hb_000760_020--Hb_003096_060 Hb_000879_180 Hb_000879_180 Hb_000096_120--Hb_000879_180 Hb_004096_180 Hb_004096_180 Hb_000096_120--Hb_004096_180 Hb_006588_070 Hb_006588_070 Hb_000096_120--Hb_006588_070 Hb_000331_090 Hb_000331_090 Hb_000096_120--Hb_000331_090 Hb_000207_150 Hb_000207_150 Hb_000096_120--Hb_000207_150 Hb_000046_570 Hb_000046_570 Hb_000096_120--Hb_000046_570
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.88534 3.21702 5.91031 6.79963 4.84304 4.63995
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.34925 2.80957 2.08965 1.16747 2.32141

CAGE analysis